Os09g0471400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os09g0471400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153.89 | 0.583 | 10.3 | 2.04 | 0.425 | -3.39 | 0.825 | 0.165 | 0.53 | 7.63 | 28.43 | 5391 | -- | -- |
| 153.67 | 0.577 | 10.3 | 2.04 | 0.426 | -3.44 | 0.823 | -- | 0.519 | 7.61 | 27.59 | 5375 | -- | -- |
| 155.12 | 0.58 | 10.3 | 2.09 | 0.442 | -3.43 | -- | -0.113 | 0.521 | 6.87 | 27.45 | 5376 | -- | -- |
| 155.13 | 0.58 | 10.3 | 2.06 | 0.44 | -3.42 | -- | -- | 0.519 | 6.86 | 27.53 | 5376 | -- | -- |
| 164.47 | 0.597 | 10.3 | 2.07 | -- | -3.48 | -- | -0.175 | 0.52 | -- | 27.5 | 5568 | -- | -- |
| 333.36 | 0.856 | 10.1 | 3.75 | 0.479 | -- | 0.0595 | -- | 1.34 | 5.54 | -- | -- | -- | -- |
| 333.36 | 0.855 | 10.1 | 3.75 | 0.479 | -- | -- | -- | 1.34 | 5.48 | -- | -- | -- | -- |
| 164.49 | 0.597 | 10.3 | 2.06 | -- | -3.44 | -- | -- | 0.517 | -- | 27.7 | 5559 | -- | -- |
| 148.28 | 0.567 | 10.4 | -- | 0.434 | -4.14 | -- | -- | -0.107 | 6.21 | 23.89 | 31460 | -- | -- |
| 345.32 | 0.868 | 10.1 | 3.77 | -- | -- | -- | -- | 1.35 | -- | -- | -- | -- | -- |
| 704.57 | 1.24 | 10.2 | -- | 0.543 | -- | -- | -- | 0.92 | 5.2 | -- | -- | -- | -- |
| 156.99 | 0.584 | 10.4 | -- | -- | -4.2 | -- | -- | -0.11 | -- | 24.18 | 34403 | -- | -- |
| 719.99 | 1.25 | 10.2 | -- | -- | -- | -- | -- | 0.932 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 145.21 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 2 | 145.30 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 3 | 145.32 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 7 | 145.33 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 35 | 146.38 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 56 | 146.70 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 57 | 146.71 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 81 | 147.37 | radiation | 1 | 43200 | < th | dose dependent | sin | 14 | NA |
| 143 | 148.84 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 20 |
| 187 | 149.71 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 10 |
| 255 | 150.11 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 293 | 150.29 | radiation | 1 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 302 | 150.46 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 339 | 150.49 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 362 | 150.63 | radiation | 1 | 43200 | < th | dose independent | sin | 16 | NA |
| 393 | 151.18 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 17 |
| 394 | 151.19 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 13 |
| 418 | 151.34 | radiation | 1 | 43200 | > th | dose independent | sin | 15 | NA |
| 422 | 151.43 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 443 | 151.52 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 514 | 152.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 531 | 152.62 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 17 |
| 618 | 153.06 | temperature | 15 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 632 | 153.14 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 634 | 153.14 | temperature | 20 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 647 | 153.20 | temperature | 20 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 650 | 153.23 | temperature | 25 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 700 | 153.47 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 709 | 153.50 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 12 |
| 719 | 153.53 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 722 | 153.55 | temperature | 20 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 732 | 153.60 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 736 | 153.62 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 742 | 153.65 | temperature | 20 | 43200 | < th | dose independent | sin | 16 | NA |
| 780 | 153.74 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 781 | 153.74 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 805 | 153.78 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 813 | 153.80 | temperature | 20 | 43200 | > th | dose independent | rect. | 13 | 13 |
| 816 | 153.81 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 824 | 153.82 | temperature | 20 | 43200 | < th | dose independent | rect. | 12 | 18 |
| 872 | 153.89 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 16 | 8 |
| 934 | 153.96 | temperature | 20 | 43200 | > th | dose independent | sin | 16 | NA |
| 959 | 153.99 | temperature | 10 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 963 | 153.99 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 16 | 15 |
| 994 | 154.02 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |