Os09g0471300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os09g0471300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.27 | 0.65 | 4.55 | -2.39 | 0.211 | -1.21 | -2.37 | 4.4 | -0.492 | 19 | 24.46 | 4670 | -- | -- |
| 197.34 | 0.654 | 4.66 | -2.81 | 0.139 | -1.49 | -2.53 | -- | -0.562 | 18.4 | 21.1 | 10220 | -- | -- |
| 202.45 | 0.663 | 4.53 | -2.29 | 0.271 | -1.16 | -- | 4.24 | -0.444 | 22.9 | 24.1 | 4230 | -- | -- |
| 205.82 | 0.668 | 4.66 | -2.16 | 0.279 | -1.88 | -- | -- | -0.516 | 21.5 | 18.8 | 28693 | -- | -- |
| 206.71 | 0.67 | 4.53 | -2.27 | -- | -1.15 | -- | 4.28 | -0.442 | -- | 24.1 | 4356 | -- | -- |
| 236 | 0.72 | 4.78 | -4.11 | 0.202 | -- | -2.38 | -- | -1.11 | 18.9 | -- | -- | -- | -- |
| 249.46 | 0.74 | 4.79 | -4.07 | 0.235 | -- | -- | -- | -1.12 | 21.4 | -- | -- | -- | -- |
| 209.62 | 0.674 | 4.66 | -2.14 | -- | -1.88 | -- | -- | -0.511 | -- | 18.8 | 28757 | -- | -- |
| 221.35 | 0.693 | 4.5 | -- | 0.266 | -3.42 | -- | -- | 0.148 | 22 | 18.4 | 47520 | -- | -- |
| 252.71 | 0.743 | 4.78 | -4.07 | -- | -- | -- | -- | -1.12 | -- | -- | -- | -- | -- |
| 686.83 | 1.23 | 4.68 | -- | 0.246 | -- | -- | -- | -0.67 | 20.1 | -- | -- | -- | -- |
| 225.68 | 0.7 | 4.49 | -- | -- | -3.41 | -- | -- | 0.146 | -- | 18.44 | 47520 | -- | -- |
| 690.16 | 1.23 | 4.68 | -- | -- | -- | -- | -- | -0.673 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 186.93 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 2 | 187.35 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 5 |
| 6 | 187.55 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 7 | 187.62 | temperature | 20 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 13 | 187.70 | temperature | 20 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 53 | 188.59 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 13 |
| 79 | 188.88 | temperature | 20 | 4320 | > th | dose dependent | sin | 9 | NA |
| 218 | 190.34 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 230 | 190.43 | temperature | 20 | 4320 | > th | dose dependent | rect. | 19 | 4 |
| 288 | 190.91 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 295 | 190.99 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 308 | 191.05 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 352 | 191.37 | temperature | 20 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 355 | 191.38 | temperature | 20 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 491 | 191.87 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 520 | 191.97 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 23 |
| 540 | 192.00 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 23 |
| 556 | 192.05 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 673 | 192.25 | temperature | 25 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 847 | 192.40 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 21 |
| 853 | 192.41 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 880 | 192.44 | temperature | 20 | 4320 | > th | dose independent | sin | 10 | NA |
| 935 | 192.48 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 21 |
| 949 | 192.50 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 958 | 192.51 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 960 | 192.51 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 17 |
| 961 | 192.51 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 986 | 192.53 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 14 |