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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0471200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : EGF-like calcium-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0315) R2 : 0.386
β1 : -0.576 (0.115) R2dD : 0.0361 R2D : 0.0222
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.13 (0.156) R2dE : 0.237 R2E : 0.142
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.54 (0.635) R2dD*E : 0.206 R2D*E : 0.123
γ1 : -0.0508 (0.0678) R2dN8 : 0.000524 R2N8 : 0.0015
σ : 0.588
deviance : 159.51
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1005
memory length : 353
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 23.1
open length of G : 2.07

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
153.51 0.582 3.07 -0.597 0.293 1.83 -0.531 -7.24 -0.0569 1.72 1005 355 23.1 1.92
201.42 0.661 3.07 -0.597 0.293 1.83 -0.531 -- -0.0569 1.72 1005 355 23.1 2.21
154.47 0.579 3.07 -0.576 0.297 1.84 -- -7.54 -0.0508 1.53 1005 353 23.1 2.07
204.93 0.667 3.07 -0.594 0.297 1.57 -- -- -0.106 1.83 1005 306 23.1 2.5
159.51 0.588 3.07 -0.576 -- 2.13 -- -7.54 -0.0508 -- 1005 353 23.1 2.07
226.47 0.705 3.08 -0.608 0.528 -- -1.52 -- -0.189 2.37 -- -- -- --
234.86 0.718 3.07 -0.566 0.524 -- -- -- -0.18 2.27 -- -- -- --
209.48 0.674 3.06 -0.595 -- 1.71 -- -- -0.0881 -- 1005 330 22.9 2.48
214.19 0.682 3.07 -- 0.291 1.53 -- -- -0.0551 1.7 1004 318 23 2.59
251.15 0.741 3.07 -0.544 -- -- -- -- -0.167 -- -- -- -- --
243.3 0.73 3.06 -- 0.513 -- -- -- -0.117 2.25 -- -- -- --
218.7 0.689 3.06 -- -- 1.72 -- -- -0.0336 -- 1004 319 22.9 2.67
258.96 0.751 3.06 -- -- -- -- -- -0.107 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.45 atmosphere 1005.0 270 < th dose independent rect. 23 2
2 171.23 atmosphere 1005.0 720 < th dose independent rect. 20 1
3 172.78 atmosphere 1005.0 270 < th dose independent rect. 21 6
4 172.89 atmosphere 1005.0 720 < th dose independent rect. 20 3
11 174.98 atmosphere 1005.0 720 > th dose independent rect. 19 5
23 176.19 atmosphere 1005.0 270 < th dose dependent rect. 1 1
37 179.35 atmosphere 1005.0 10 < th dose dependent rect. 24 6
39 179.67 atmosphere 1005.0 90 < th dose dependent rect. 24 5
66 182.17 radiation 1.0 1440 < th dose independent rect. 13 2
67 182.17 radiation 1.0 1440 < th dose dependent rect. 13 2
69 182.25 radiation 1.0 1440 < th dose independent rect. 11 4
70 182.25 radiation 1.0 1440 < th dose dependent rect. 11 4
80 182.95 radiation 1.0 1440 > th dose independent rect. 13 2
87 183.15 humidity 90.0 720 > th dose dependent rect. 20 1
89 183.22 radiation 1.0 1440 < th dose independent rect. 11 1
90 183.22 radiation 1.0 1440 < th dose dependent rect. 11 1
94 183.46 radiation 20.0 1440 < th dose dependent rect. 11 2
145 184.98 radiation 20.0 1440 < th dose dependent rect. 11 4
174 186.26 temperature 20.0 10 > th dose independent rect. 1 3
176 186.52 radiation 20.0 1440 < th dose independent rect. 11 2
249 189.66 atmosphere 1005.0 270 > th dose independent rect. 18 13
264 189.97 radiation 10.0 1440 < th dose dependent rect. 9 19
293 190.29 wind 1.0 270 < th dose dependent rect. 24 1
297 190.34 wind 1.0 90 < th dose independent rect. 23 5
326 190.91 radiation 20.0 1440 < th dose dependent rect. 11 17
342 191.21 temperature 20.0 270 > th dose independent rect. 22 6
348 191.56 radiation 10.0 1440 < th dose dependent sin 21 NA
359 191.82 wind 1.0 270 < th dose independent rect. 23 2
375 191.95 atmosphere 1005.0 10 < th dose independent rect. 22 7
431 192.36 atmosphere 1005.0 270 < th dose independent sin 12 NA
453 192.55 radiation 10.0 720 < th dose independent rect. 16 1
454 192.56 temperature 20.0 270 > th dose independent rect. 23 3
484 192.86 atmosphere 1005.0 270 > th dose independent sin 12 NA
561 193.64 atmosphere 1005.0 30 < th dose dependent rect. 21 9
586 193.73 wind 7.0 720 > th dose independent rect. 17 1
602 193.81 radiation 10.0 1440 < th dose independent rect. 12 16
609 193.83 wind 1.0 90 < th dose independent rect. 17 11
628 193.90 radiation 1.0 1440 > th dose independent rect. 9 1
658 194.10 wind 5.0 720 > th dose independent rect. 21 1
664 194.18 temperature 20.0 10 > th dose independent rect. 23 5
665 194.18 precipitation 0.1 270 > th dose dependent rect. 2 2
671 194.23 precipitation 0.1 270 > th dose independent rect. 2 2
697 194.33 temperature 20.0 10 > th dose independent rect. 1 5
721 194.49 radiation 10.0 1440 > th dose independent sin 1 NA
763 194.78 atmosphere 1005.0 30 < th dose dependent sin 9 NA
804 195.03 radiation 10.0 720 < th dose independent rect. 14 12
827 195.11 radiation 1.0 1440 > th dose dependent rect. 11 2
854 195.24 wind 7.0 4320 > th dose independent rect. 17 1
860 195.30 temperature 20.0 10 > th dose independent rect. 23 7
909 195.56 radiation 10.0 1440 > th dose independent rect. 11 23
984 195.91 radiation 1.0 1440 > th dose dependent rect. 11 4