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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0469500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.45 (0.0318) R2 : 0.188
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.757 (0.0788) R2dC : 0.166 R2C : 0.157
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.244 (0.0668) R2dN8 : 0.0306 R2N8 : 0.0218
σ : 0.599
deviance : 163.86
__
_____
C
peak time of C : 9.18
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
146.86 0.569 6.44 -0.235 0.814 0.791 -0.849 -0.273 -0.222 9.76 78.63 1266 -- --
146.9 0.564 6.44 -0.217 0.825 0.772 -0.812 -- -0.218 9.74 78 1245 -- --
149.45 0.569 6.44 -0.251 0.83 0.787 -- -0.0122 -0.218 9.69 78 1245 -- --
149.45 0.569 6.44 -0.25 0.831 0.787 -- -- -0.217 9.7 78 1245 -- --
185.3 0.634 6.47 -0.263 -- 0.696 -- -0.401 -0.228 -- 80.11 1444 -- --
160.53 0.594 6.45 -0.0756 0.75 -- -0.921 -- -0.254 9.33 -- -- -- --
163.53 0.599 6.45 -0.11 0.757 -- -- -- -0.256 9.16 -- -- -- --
185.52 0.634 6.46 -0.224 -- 0.665 -- -- -0.225 -- 80.92 1440 -- --
151.03 0.572 6.43 -- 0.83 0.74 -- -- -0.194 9.69 78.43 1245 -- --
196.75 0.655 6.47 -0.113 -- -- -- -- -0.252 -- -- -- -- --
163.86 0.599 6.45 -- 0.757 -- -- -- -0.244 9.18 -- -- -- --
186.71 0.636 6.46 -- -- 0.635 -- -- -0.214 -- 84.41 1444 -- --
197.08 0.655 6.47 -- -- -- -- -- -0.239 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 142.34 temperature 25.0 10 < th dose independent rect. 19 9
5 143.47 temperature 10.0 90 > th dose dependent rect. 16 9
6 144.15 temperature 25.0 30 > th dose independent rect. 18 15
7 144.29 temperature 25.0 10 < th dose independent rect. 13 15
8 144.41 temperature 25.0 30 > th dose independent rect. 18 13
9 144.47 temperature 25.0 30 > th dose independent rect. 16 17
17 144.99 temperature 25.0 30 > th dose independent rect. 16 15
31 146.21 humidity 50.0 10 > th dose dependent rect. 13 15
34 146.33 temperature 25.0 30 > th dose independent sin 11 NA
35 146.38 humidity 80.0 720 < th dose dependent rect. 19 1
37 146.46 humidity 80.0 720 < th dose dependent rect. 18 3
39 146.53 temperature 25.0 10 < th dose independent rect. 22 6
59 147.16 temperature 30.0 43200 > th dose dependent rect. 18 1
84 147.37 wind 9.0 10 < th dose independent rect. 13 15
89 147.45 humidity 90.0 90 < th dose independent rect. 2 1
90 147.45 humidity 50.0 10 > th dose independent rect. 13 15
91 147.46 humidity 80.0 720 < th dose independent rect. 19 1
92 147.48 precipitation 0.1 90 < th dose independent rect. 3 22
94 147.48 precipitation 0.1 90 < th dose dependent rect. 3 22
96 147.50 temperature 30.0 43200 > th dose independent rect. 18 1
114 147.54 temperature 10.0 270 > th dose dependent rect. 14 9
117 147.56 humidity 70.0 720 < th dose independent rect. 18 14
118 147.56 radiation 1.0 270 < th dose dependent rect. 5 22
123 147.62 temperature 30.0 43200 < th dose independent rect. 18 11
128 147.66 atmosphere 1015.0 90 < th dose independent rect. 3 22
149 147.75 temperature 30.0 43200 < th dose independent rect. 18 1
151 147.77 temperature 30.0 43200 < th dose independent rect. 18 3
177 147.84 atmosphere 1000.0 10 > th dose dependent rect. 2 2
178 147.87 atmosphere 995.0 90 > th dose dependent rect. 1 2
186 147.96 atmosphere 1000.0 90 > th dose independent rect. 1 2
190 148.00 temperature 25.0 90 > th dose independent rect. 16 9
192 148.00 temperature 25.0 720 > th dose dependent rect. 18 4
193 148.02 atmosphere 1015.0 10 < th dose independent rect. 4 21
213 148.08 radiation 40.0 10 < th dose independent rect. 12 16
225 148.16 humidity 80.0 720 < th dose dependent rect. 17 15
227 148.18 temperature 10.0 90 > th dose dependent rect. 1 2
240 148.24 wind 9.0 10 < th dose independent rect. 4 9
242 148.26 precipitation 0.1 10 < th dose independent rect. 4 9
243 148.26 precipitation 0.1 10 < th dose dependent rect. 4 9
244 148.26 radiation 1.0 270 < th dose dependent rect. 11 16
247 148.28 wind 9.0 90 < th dose independent rect. 1 2
250 148.29 temperature 10.0 90 > th dose independent rect. 1 2
252 148.29 temperature 30.0 90 < th dose independent rect. 1 2
253 148.29 humidity 50.0 90 > th dose independent rect. 1 2
257 148.29 atmosphere 1010.0 90 < th dose independent rect. 1 2
259 148.29 radiation 1.0 90 < th dose independent rect. 1 2
264 148.29 precipitation 0.1 90 < th dose independent rect. 1 2
265 148.29 temperature 10.0 90 > th dose independent rect. 3 22
266 148.29 radiation 1.0 90 < th dose dependent rect. 1 2
271 148.29 precipitation 0.1 90 < th dose dependent rect. 1 2
278 148.33 temperature 10.0 10 > th dose independent rect. 4 9
280 148.33 atmosphere 995.0 10 > th dose independent rect. 4 9
281 148.33 atmosphere 1015.0 10 < th dose independent rect. 4 9
282 148.33 temperature 10.0 10 > th dose independent rect. 13 15
284 148.35 atmosphere 1005.0 10 > th dose independent rect. 2 2
285 148.35 temperature 25.0 270 > th dose independent rect. 15 7
318 148.44 atmosphere 995.0 90 > th dose independent rect. 3 22
333 148.46 precipitation 0.1 14400 < th dose independent rect. 5 1
335 148.46 precipitation 0.1 14400 < th dose dependent rect. 5 1
338 148.48 humidity 50.0 90 > th dose dependent rect. 1 2
342 148.49 wind 9.0 10 < th dose dependent rect. 13 15
345 148.53 wind 9.0 90 < th dose dependent rect. 1 2
356 148.56 wind 3.0 30 < th dose dependent rect. 9 19
359 148.59 humidity 80.0 10 > th dose independent rect. 1 3
360 148.59 humidity 70.0 720 > th dose independent rect. 18 9
364 148.63 precipitation 0.1 10 < th dose independent rect. 13 15
366 148.63 precipitation 0.1 10 < th dose dependent rect. 13 15
371 148.66 temperature 25.0 14400 < th dose independent rect. 2 1
374 148.67 wind 1.0 90 > th dose independent rect. 16 9
375 148.67 atmosphere 1015.0 90 < th dose independent rect. 16 9
382 148.69 humidity 50.0 90 > th dose independent rect. 1 15
387 148.72 humidity 70.0 720 < th dose independent sin 12 NA
392 148.73 humidity 60.0 1440 > th dose independent rect. 13 6
393 148.73 wind 9.0 90 < th dose independent rect. 1 15
407 148.74 humidity 70.0 1440 > th dose independent rect. 19 12
418 148.77 precipitation 0.1 14400 > th dose dependent rect. 5 1
421 148.77 humidity 80.0 10 > th dose dependent rect. 7 21
428 148.81 humidity 60.0 1440 > th dose independent rect. 13 16
436 148.83 humidity 60.0 14400 < th dose independent rect. 16 1
440 148.83 humidity 60.0 1440 > th dose independent rect. 13 12
448 148.84 temperature 20.0 30 > th dose dependent rect. 16 17
450 148.86 precipitation 0.1 14400 > th dose independent rect. 5 1
455 148.87 humidity 70.0 14400 < th dose independent rect. 18 1
456 148.87 humidity 60.0 1440 > th dose dependent rect. 11 1
459 148.88 humidity 60.0 1440 > th dose independent rect. 13 21
464 148.90 atmosphere 995.0 10 > th dose independent rect. 13 15
466 148.91 atmosphere 995.0 90 > th dose independent rect. 16 9
486 148.95 humidity 60.0 14400 > th dose independent rect. 16 2
488 148.95 precipitation 0.1 90 < th dose independent rect. 16 9
489 148.95 humidity 60.0 10 > th dose dependent rect. 19 9
490 148.95 precipitation 0.1 90 < th dose dependent rect. 16 9
496 148.99 humidity 60.0 1440 > th dose independent sin 17 NA
498 149.00 temperature 25.0 10 < th dose independent sin 12 NA
502 149.01 temperature 10.0 90 > th dose independent rect. 16 9
503 149.01 humidity 50.0 30 > th dose independent rect. 4 9
504 149.01 radiation 40.0 90 < th dose independent rect. 16 9
505 149.01 humidity 70.0 14400 < th dose independent rect. 18 14
506 149.01 temperature 10.0 90 > th dose independent rect. 1 15
507 149.01 atmosphere 1015.0 90 < th dose independent rect. 1 15
508 149.01 precipitation 0.1 90 < th dose independent rect. 1 15
510 149.01 humidity 90.0 30 < th dose independent rect. 16 17
514 149.01 precipitation 0.1 90 < th dose dependent rect. 1 15
529 149.06 humidity 70.0 1440 < th dose dependent sin 16 NA
565 149.08 humidity 70.0 1440 < th dose dependent rect. 14 20
576 149.10 humidity 60.0 1440 < th dose independent rect. 13 6
579 149.10 atmosphere 995.0 90 > th dose independent rect. 1 15
602 149.11 humidity 70.0 1440 < th dose dependent rect. 14 18
637 149.14 temperature 25.0 43200 > th dose independent rect. 5 1
646 149.14 humidity 80.0 1440 < th dose dependent rect. 10 22
659 149.15 humidity 70.0 1440 < th dose dependent rect. 14 6
704 149.18 humidity 60.0 1440 > th dose independent rect. 9 10
726 149.19 temperature 25.0 43200 > th dose dependent rect. 5 1
731 149.20 temperature 25.0 43200 < th dose independent rect. 4 2
742 149.21 humidity 60.0 1440 < th dose independent rect. 14 1
749 149.21 humidity 80.0 1440 < th dose dependent rect. 6 16
765 149.23 humidity 70.0 1440 < th dose independent rect. 17 20
768 149.23 humidity 70.0 1440 < th dose dependent rect. 11 9
792 149.24 humidity 60.0 1440 < th dose independent rect. 13 21
810 149.25 humidity 60.0 1440 > th dose independent rect. 9 20
811 149.25 humidity 80.0 1440 < th dose dependent no NA NA
826 149.26 humidity 70.0 1440 > th dose independent rect. 18 14
843 149.26 humidity 80.0 1440 < th dose dependent rect. 18 23
848 149.27 humidity 60.0 1440 > th dose independent rect. 9 16
851 149.27 atmosphere 995.0 10 > th dose independent rect. 4 21
864 149.28 wind 9.0 10 < th dose independent rect. 1 3
865 149.28 temperature 10.0 10 > th dose independent rect. 1 3
868 149.28 humidity 50.0 10 > th dose independent rect. 1 3
872 149.28 atmosphere 1010.0 10 < th dose independent rect. 1 3
874 149.28 radiation 1.0 10 < th dose independent rect. 1 3
891 149.28 temperature 10.0 10 > th dose independent rect. 4 21
895 149.28 radiation 1.0 10 < th dose dependent rect. 1 3
915 149.29 humidity 60.0 1440 > th dose independent rect. 2 17
917 149.29 humidity 60.0 1440 > th dose independent rect. 24 19
919 149.29 temperature 25.0 14400 > th dose dependent rect. 23 2
929 149.30 humidity 90.0 30 < th dose independent rect. 16 15
939 149.30 humidity 70.0 14400 < th dose dependent rect. 16 2
940 149.30 humidity 50.0 10 > th dose dependent rect. 1 3
950 149.31 humidity 60.0 1440 < th dose independent sin 17 NA
967 149.32 humidity 60.0 1440 < th dose independent rect. 11 8
989 149.34 precipitation 0.1 10 < th dose independent rect. 1 3
991 149.34 precipitation 0.1 10 < th dose dependent rect. 1 3