Os09g0468800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0468800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.5 | 0.264 | 11.5 | 0.83 | 0.708 | -0.664 | 0.0586 | 1.97 | 0.351 | 22.7 | 25.2 | 744 | -- | -- |
| 32.36 | 0.265 | 11.5 | 0.522 | 0.679 | -0.455 | 0.274 | -- | 0.25 | 23.1 | 26.29 | 854 | -- | -- |
| 31.48 | 0.261 | 11.5 | 0.843 | 0.705 | -0.663 | -- | 2.03 | 0.348 | 22.8 | 25.39 | 785 | -- | -- |
| 32.49 | 0.265 | 11.5 | 0.501 | 0.676 | -0.442 | -- | -- | 0.256 | 23.2 | 25.8 | 863 | -- | -- |
| 48.1 | 0.325 | 11.5 | 0.59 | -- | -0.657 | -- | 0.337 | 0.36 | -- | 20.78 | 3 | -- | -- |
| 37.14 | 0.286 | 11.5 | 0.403 | 0.57 | -- | 0.109 | -- | 0.237 | 23.7 | -- | -- | -- | -- |
| 37.19 | 0.286 | 11.5 | 0.398 | 0.57 | -- | -- | -- | 0.237 | 23.7 | -- | -- | -- | -- |
| 48.17 | 0.325 | 11.5 | 0.537 | -- | -0.645 | -- | -- | 0.346 | -- | 20.2 | 3 | -- | -- |
| 38.73 | 0.29 | 11.5 | -- | 0.649 | -0.325 | -- | -- | 0.19 | 23.3 | 26.4 | 869 | -- | -- |
| 57.61 | 0.355 | 11.5 | 0.414 | -- | -- | -- | -- | 0.243 | -- | -- | -- | -- | -- |
| 41.37 | 0.301 | 11.5 | -- | 0.575 | -- | -- | -- | 0.192 | 23.7 | -- | -- | -- | -- |
| 55.43 | 0.348 | 11.5 | -- | -- | -0.529 | -- | -- | 0.27 | -- | 20.6 | 6 | -- | -- |
| 62.14 | 0.368 | 11.5 | -- | -- | -- | -- | -- | 0.198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.53 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 7 |
| 3 | 30.58 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 9 |
| 40 | 30.87 | temperature | 25 | 720 | > th | dose dependent | sin | 18 | NA |
| 62 | 30.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 9 |
| 71 | 31.09 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 9 |
| 96 | 31.24 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 11 |
| 126 | 31.38 | humidity | 80 | 10 | > th | dose independent | sin | 21 | NA |
| 132 | 31.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 2 |
| 135 | 31.42 | temperature | 25 | 90 | < th | dose independent | rect. | 12 | 11 |
| 150 | 31.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 6 |
| 154 | 31.47 | humidity | 80 | 10 | > th | dose dependent | sin | 20 | NA |
| 208 | 31.58 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 223 | 31.60 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 229 | 31.62 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 266 | 31.70 | radiation | 1 | 720 | < th | dose independent | sin | 19 | NA |
| 280 | 31.73 | radiation | 1 | 720 | > th | dose independent | sin | 18 | NA |
| 283 | 31.73 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 12 |
| 286 | 31.73 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 306 | 31.78 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 15 |
| 317 | 31.80 | humidity | 80 | 10 | > th | dose independent | rect. | 6 | 14 |
| 334 | 31.83 | humidity | 80 | 720 | > th | dose independent | rect. | 4 | 18 |
| 345 | 31.84 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 347 | 31.85 | humidity | 80 | 720 | < th | dose independent | sin | 23 | NA |
| 353 | 31.86 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 13 |
| 379 | 31.92 | humidity | 80 | 10 | > th | dose independent | rect. | 6 | 12 |
| 388 | 31.93 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 13 |
| 396 | 31.94 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 12 |
| 409 | 31.96 | humidity | 80 | 720 | > th | dose independent | sin | 22 | NA |
| 414 | 31.97 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 435 | 31.98 | radiation | 1 | 720 | < th | dose dependent | sin | 19 | NA |
| 445 | 32.00 | humidity | 80 | 30 | < th | dose independent | rect. | 7 | 12 |
| 447 | 32.00 | humidity | 80 | 30 | < th | dose independent | rect. | 4 | 15 |
| 462 | 32.03 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 10 |
| 470 | 32.04 | humidity | 80 | 10 | < th | dose independent | sin | 22 | NA |
| 493 | 32.07 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 11 |
| 525 | 32.08 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 539 | 32.10 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 14 |
| 548 | 32.11 | radiation | 10 | 90 | < th | dose dependent | rect. | 6 | 11 |
| 553 | 32.12 | temperature | 25 | 30 | < th | dose independent | rect. | 13 | 13 |
| 578 | 32.13 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 591 | 32.15 | radiation | 20 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 599 | 32.16 | humidity | 70 | 720 | > th | dose independent | rect. | 11 | 20 |
| 605 | 32.17 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 7 |
| 615 | 32.17 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 616 | 32.18 | humidity | 80 | 30 | < th | dose independent | rect. | 9 | 10 |
| 620 | 32.18 | radiation | 20 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 669 | 32.23 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 4 |
| 677 | 32.24 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 18 |
| 697 | 32.26 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 9 |
| 710 | 32.27 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 730 | 32.28 | humidity | 70 | 720 | > th | dose dependent | sin | 21 | NA |
| 763 | 32.30 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 786 | 32.32 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 7 |
| 798 | 32.33 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 11 |
| 812 | 32.34 | temperature | 25 | 90 | > th | dose independent | rect. | 13 | 15 |
| 819 | 32.35 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 7 |
| 838 | 32.36 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 10 |
| 848 | 32.36 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 4 |
| 850 | 32.36 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 862 | 32.37 | humidity | 90 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 871 | 32.38 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 22 |
| 893 | 32.39 | temperature | 20 | 10 | > th | dose dependent | sin | 15 | NA |
| 904 | 32.40 | humidity | 80 | 30 | > th | dose independent | rect. | 21 | 23 |
| 914 | 32.40 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 18 |
| 955 | 32.42 | humidity | 90 | 30 | < th | dose dependent | rect. | 7 | 12 |
| 957 | 32.42 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 15 |
| 961 | 32.42 | humidity | 90 | 30 | < th | dose dependent | rect. | 7 | 21 |
| 964 | 32.42 | humidity | 60 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 989 | 32.43 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 8 |