Os09g0468000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0468000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Multi antimicrobial extrusion protein MatE family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 326.88 | 0.849 | 5.52 | -1.41 | 2 | 0.904 | -1.24 | 9.82 | -0.855 | 14.3 | 0.07656 | 4316 | 11.4 | 7.02 |
| 373.75 | 0.9 | 5.53 | -1.4 | 1.98 | 1.63 | -1.72 | -- | -0.884 | 14.5 | 1.983 | 4317 | 13.1 | 6.3 |
| 326.88 | 0.842 | 5.51 | -1.41 | 2.06 | 0.925 | -- | 9.89 | -0.852 | 14.3 | 0.3258 | 4305 | 11.4 | 6.93 |
| 373.97 | 0.901 | 5.53 | -1.45 | 1.97 | 1.7 | -- | -- | -1.05 | 14.4 | 2.51 | 4316 | 14.8 | 6.39 |
| 486.54 | 1.03 | 5.37 | -1.95 | -- | 1.28 | -- | -1.17 | -0.617 | -- | 0.3981 | 4331 | 11.4 | 7.26 |
| 423.73 | 0.965 | 5.4 | -1.94 | 1.97 | -- | -1.49 | -- | -0.771 | 14.3 | -- | -- | -- | -- |
| 431.87 | 0.973 | 5.4 | -1.98 | 1.97 | -- | -- | -- | -0.781 | 14.2 | -- | -- | -- | -- |
| 493.06 | 1.04 | 5.38 | -2.01 | -- | 1.29 | -- | -- | -0.635 | -- | 1.037 | 10137 | 11.5 | 7.29 |
| 417.66 | 0.952 | 5.53 | -- | 2.06 | 2.3 | -- | -- | -0.934 | 14.5 | 2.737 | 4316 | 14.8 | 6.38 |
| 662.32 | 1.2 | 5.42 | -2.07 | -- | -- | -- | -- | -0.828 | -- | -- | -- | -- | -- |
| 535.68 | 1.08 | 5.35 | -- | 2 | -- | -- | -- | -0.56 | 14.2 | -- | -- | -- | -- |
| 533.44 | 1.08 | 5.37 | -- | -- | 2.22 | -- | -- | -0.673 | -- | 1.625 | 10136 | 10.8 | 7.58 |
| 775.03 | 1.3 | 5.37 | -- | -- | -- | -- | -- | -0.599 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 292.92 | wind | 7 | 14400 | < th | dose independent | rect. | 10 | 11 |
| 3 | 293.36 | wind | 7 | 14400 | > th | dose independent | rect. | 10 | 11 |
| 5 | 293.40 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 16 |
| 6 | 293.43 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 16 |
| 7 | 293.57 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 8 | 293.67 | wind | 7 | 14400 | > th | dose independent | rect. | 7 | 14 |
| 10 | 293.74 | wind | 7 | 14400 | < th | dose independent | rect. | 7 | 14 |
| 15 | 294.79 | wind | 7 | 14400 | < th | dose independent | sin | 23 | NA |
| 18 | 295.01 | wind | 7 | 14400 | > th | dose independent | sin | 23 | NA |
| 23 | 295.47 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 37 | 295.49 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 11 |
| 38 | 295.54 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 47 | 295.96 | wind | 7 | 14400 | > th | dose dependent | rect. | 5 | 16 |
| 53 | 296.13 | wind | 7 | 14400 | < th | dose independent | rect. | 11 | 5 |
| 63 | 296.27 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 109 | 296.78 | temperature | 30 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 113 | 296.85 | wind | 7 | 14400 | > th | dose independent | rect. | 24 | 21 |
| 127 | 297.08 | wind | 7 | 14400 | < th | dose independent | rect. | 24 | 21 |
| 146 | 297.30 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 154 | 297.41 | temperature | 30 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 157 | 297.45 | wind | 7 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 167 | 297.66 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 188 | 297.80 | wind | 9 | 14400 | > th | dose dependent | rect. | 17 | 22 |
| 235 | 298.45 | wind | 7 | 14400 | < th | dose independent | rect. | 10 | 15 |
| 264 | 299.00 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 20 |
| 288 | 299.30 | wind | 7 | 14400 | > th | dose dependent | rect. | 24 | 21 |
| 295 | 299.39 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 20 |
| 326 | 299.67 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 15 |
| 380 | 300.12 | temperature | 30 | 43200 | > th | dose dependent | sin | 9 | NA |
| 435 | 300.54 | wind | 7 | 14400 | > th | dose dependent | rect. | 5 | 20 |
| 464 | 300.95 | wind | 7 | 14400 | > th | dose dependent | sin | 20 | NA |
| 484 | 301.03 | wind | 9 | 14400 | < th | dose independent | rect. | 17 | 22 |
| 490 | 301.14 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 505 | 301.31 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 4 |
| 533 | 301.51 | wind | 7 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 546 | 301.62 | wind | 7 | 14400 | > th | dose independent | rect. | 20 | 21 |
| 562 | 301.85 | wind | 5 | 14400 | > th | dose dependent | sin | 23 | NA |
| 578 | 301.99 | temperature | 30 | 43200 | > th | dose independent | sin | 9 | NA |
| 632 | 302.29 | temperature | 30 | 43200 | < th | dose independent | sin | 9 | NA |
| 676 | 302.80 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 695 | 302.96 | wind | 7 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 728 | 303.27 | wind | 7 | 14400 | > th | dose independent | no | NA | NA |
| 807 | 303.90 | wind | 7 | 14400 | < th | dose independent | no | NA | NA |
| 819 | 303.99 | wind | 7 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 832 | 304.07 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 900 | 304.63 | wind | 7 | 14400 | > th | dose dependent | no | NA | NA |
| 902 | 304.64 | wind | 7 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 920 | 304.68 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 938 | 304.74 | temperature | 30 | 43200 | > th | dose dependent | no | NA | NA |