Os09g0466900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os09g0466900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 188.23 | 0.645 | 7 | 1.91 | 1.27 | -2.62 | -0.274 | -0.233 | 0.623 | 12.2 | 16.4 | 466 | -- | -- |
| 188.26 | 0.639 | 7 | 1.95 | 1.26 | -2.63 | -0.279 | -- | 0.626 | 12.2 | 16.3 | 473 | -- | -- |
| 188.54 | 0.64 | 7 | 1.91 | 1.26 | -2.62 | -- | -0.212 | 0.622 | 12.1 | 16.29 | 473 | -- | -- |
| 188.57 | 0.64 | 7 | 1.94 | 1.26 | -2.63 | -- | -- | 0.631 | 12.1 | 16.3 | 473 | -- | -- |
| 247.95 | 0.733 | 7 | 2.13 | -- | -3.07 | -- | 0.0359 | 0.718 | -- | 16.4 | 750 | -- | -- |
| 280.6 | 0.785 | 7.08 | 1.31 | 1.53 | -- | 0.144 | -- | 0.209 | 10.1 | -- | -- | -- | -- |
| 280.68 | 0.785 | 7.08 | 1.31 | 1.53 | -- | -- | -- | 0.209 | 10.1 | -- | -- | -- | -- |
| 247.92 | 0.733 | 7 | 2.12 | -- | -3.07 | -- | -- | 0.714 | -- | 16.4 | 742 | -- | -- |
| 274.38 | 0.771 | 7.07 | -- | 1.37 | -1.66 | -- | -- | 0.311 | 11.7 | 20 | 400 | -- | -- |
| 422.48 | 0.96 | 7.12 | 1.29 | -- | -- | -- | -- | 0.207 | -- | -- | -- | -- | -- |
| 326.19 | 0.845 | 7.11 | -- | 1.53 | -- | -- | -- | 0.0628 | 10 | -- | -- | -- | -- |
| 352.67 | 0.875 | 7.08 | -- | -- | -2.07 | -- | -- | 0.374 | -- | 19.71 | 715 | -- | -- |
| 466.64 | 1.01 | 7.15 | -- | -- | -- | -- | -- | 0.0637 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 182.15 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 2 | 182.27 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 3 | 182.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 8 | 183.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 13 | 184.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 20 | 184.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 37 | 185.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 56 | 186.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 104 | 188.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 105 | 188.60 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 106 | 188.65 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 125 | 189.32 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 147 | 190.07 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 164 | 190.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 192 | 191.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 15 |
| 200 | 191.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 224 | 191.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 299 | 193.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 304 | 193.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 306 | 193.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 341 | 194.27 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 346 | 194.41 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 357 | 194.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 508 | 196.63 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 653 | 198.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 683 | 198.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 708 | 199.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 825 | 200.57 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 852 | 200.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 856 | 200.89 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 895 | 201.19 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 929 | 201.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |