Os09g0466800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0466800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.26 | 0.306 | 3.53 | 0.961 | 0.0878 | -45.8 | -0.254 | -94.1 | -0.0585 | 5.2 | 15 | 90 | -- | -- |
| 43.52 | 0.31 | 3.14 | 0.133 | 0.0875 | -1.29 | -0.236 | -- | -0.0626 | 5.64 | 14.5 | 1954 | -- | -- |
| 43.42 | 0.307 | 3.53 | 0.967 | 0.0866 | -45.9 | -- | -94.1 | -0.057 | 5.57 | 15 | 92 | -- | -- |
| 43.44 | 0.307 | 3.14 | 0.148 | 0.0886 | -1.31 | -- | -- | -0.0603 | 5.61 | 14.49 | 1937 | -- | -- |
| 43.81 | 0.308 | 3.53 | 0.962 | -- | -45.9 | -- | -94.2 | -0.0559 | -- | 15 | 89 | -- | -- |
| 46.67 | 0.32 | 3.15 | 0.0793 | 0.0891 | -- | -0.319 | -- | -0.0763 | 4.23 | -- | -- | -- | -- |
| 46.94 | 0.321 | 3.15 | 0.0827 | 0.0899 | -- | -- | -- | -0.0746 | 4.92 | -- | -- | -- | -- |
| 43.83 | 0.308 | 3.14 | 0.153 | -- | -1.31 | -- | -- | -0.0548 | -- | 14.42 | 1940 | -- | -- |
| 43.98 | 0.309 | 3.14 | -- | 0.0895 | -1.26 | -- | -- | -0.0751 | 5.61 | 14.34 | 1962 | -- | -- |
| 47.36 | 0.322 | 3.15 | 0.086 | -- | -- | -- | -- | -0.0723 | -- | -- | -- | -- | -- |
| 47.12 | 0.321 | 3.15 | -- | 0.0914 | -- | -- | -- | -0.0838 | 4.89 | -- | -- | -- | -- |
| 44.39 | 0.31 | 3.15 | -- | -- | -1.24 | -- | -- | -0.0731 | -- | 14.31 | 1961 | -- | -- |
| 47.56 | 0.322 | 3.15 | -- | -- | -- | -- | -- | -0.0818 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.19 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 2 | 42.19 | temperature | 15 | 1440 | > th | dose independent | rect. | 7 | 18 |
| 3 | 42.23 | temperature | 15 | 720 | > th | dose independent | rect. | 7 | 15 |
| 4 | 42.38 | temperature | 15 | 720 | > th | dose independent | rect. | 10 | 9 |
| 5 | 42.39 | temperature | 20 | 10 | < th | dose dependent | rect. | 24 | 1 |
| 7 | 42.43 | temperature | 20 | 30 | < th | dose dependent | rect. | 23 | 5 |
| 16 | 42.48 | temperature | 15 | 270 | > th | dose independent | rect. | 3 | 23 |
| 47 | 42.61 | temperature | 20 | 10 | < th | dose dependent | sin | 9 | NA |
| 52 | 42.64 | temperature | 15 | 720 | > th | dose independent | rect. | 19 | 6 |
| 53 | 42.64 | temperature | 15 | 1440 | > th | dose independent | rect. | 13 | 10 |
| 54 | 42.64 | temperature | 15 | 1440 | > th | dose independent | rect. | 10 | 15 |
| 86 | 42.77 | temperature | 15 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 99 | 42.80 | temperature | 15 | 270 | > th | dose independent | rect. | 20 | 13 |
| 122 | 42.82 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 17 |
| 124 | 42.83 | humidity | 90 | 1440 | > th | dose dependent | rect. | 7 | 9 |
| 129 | 42.84 | temperature | 15 | 1440 | > th | dose independent | rect. | 12 | 14 |
| 138 | 42.84 | humidity | 90 | 1440 | > th | dose dependent | rect. | 6 | 11 |
| 171 | 42.89 | temperature | 15 | 1440 | > th | dose independent | rect. | 17 | 6 |
| 206 | 42.94 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 208 | 42.95 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 1 |
| 212 | 42.95 | temperature | 15 | 1440 | > th | dose independent | rect. | 16 | 10 |
| 219 | 42.95 | temperature | 20 | 10 | < th | dose dependent | rect. | 18 | 14 |
| 224 | 42.96 | temperature | 15 | 270 | > th | dose independent | rect. | 15 | 13 |
| 236 | 42.97 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 13 |
| 253 | 42.99 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 1 | 9 |
| 254 | 42.99 | humidity | 90 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 261 | 43.00 | humidity | 50 | 1440 | > th | dose independent | rect. | 17 | 10 |
| 265 | 43.00 | temperature | 15 | 270 | > th | dose independent | rect. | 23 | 23 |
| 280 | 43.01 | humidity | 50 | 1440 | > th | dose independent | rect. | 17 | 3 |
| 287 | 43.02 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 288 | 43.02 | temperature | 15 | 1440 | > th | dose independent | rect. | 18 | 3 |
| 309 | 43.02 | humidity | 90 | 10 | > th | dose dependent | rect. | 23 | 1 |
| 329 | 43.03 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 7 |
| 355 | 43.04 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 2 |
| 424 | 43.06 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 498 | 43.11 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 17 | 2 |
| 549 | 43.14 | temperature | 15 | 720 | > th | dose independent | rect. | 13 | 18 |
| 625 | 43.17 | temperature | 15 | 720 | < th | dose dependent | rect. | 17 | 9 |
| 634 | 43.18 | wind | 9 | 720 | > th | dose independent | rect. | 12 | 4 |
| 638 | 43.18 | temperature | 15 | 1440 | < th | dose dependent | sin | 16 | NA |
| 647 | 43.18 | temperature | 15 | 720 | < th | dose dependent | rect. | 10 | 15 |
| 719 | 43.20 | humidity | 90 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 726 | 43.20 | temperature | 15 | 1440 | < th | dose independent | rect. | 14 | 12 |
| 733 | 43.20 | temperature | 15 | 270 | > th | dose independent | rect. | 21 | 23 |
| 790 | 43.21 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 16 | 4 |
| 795 | 43.21 | temperature | 15 | 1440 | < th | dose independent | rect. | 17 | 9 |
| 843 | 43.23 | temperature | 15 | 1440 | < th | dose independent | sin | 18 | NA |
| 863 | 43.23 | wind | 9 | 720 | > th | dose dependent | rect. | 12 | 4 |
| 869 | 43.23 | temperature | 20 | 720 | < th | dose dependent | rect. | 11 | 7 |
| 905 | 43.24 | temperature | 20 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 914 | 43.25 | temperature | 15 | 90 | > th | dose independent | sin | 8 | NA |
| 917 | 43.25 | temperature | 15 | 90 | > th | dose independent | sin | 17 | NA |
| 919 | 43.25 | temperature | 15 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 923 | 43.25 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 17 | 13 |
| 931 | 43.25 | temperature | 15 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 951 | 43.26 | temperature | 15 | 90 | > th | dose independent | no | NA | NA |
| 953 | 43.26 | temperature | 15 | 90 | < th | dose independent | sin | 7 | NA |