Os09g0458500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os09g0458500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 259.15 | 0.756 | 6.06 | 0.829 | 1.62 | -4.09 | -0.972 | -0.86 | 0.556 | 12 | 24.45 | 956 | 23.5 | -- |
| 259.74 | 0.751 | 6.07 | 0.77 | 1.65 | -3.96 | -1.16 | -- | 0.529 | 12 | 24.71 | 962 | 23.8 | -- |
| 261.89 | 0.754 | 6.05 | 0.92 | 1.52 | -4.1 | -- | -1.65 | 0.583 | 11.9 | 24.27 | 956 | 23.1 | -- |
| 266.11 | 0.76 | 6.08 | 0.677 | 1.62 | -3.9 | -- | -- | 0.527 | 12 | 24.75 | 972 | 23.7 | -- |
| 353.66 | 0.876 | 6.1 | 0.708 | -- | -3.11 | -- | -0.566 | 0.521 | -- | 24.51 | 1429 | 23.2 | -- |
| 440.94 | 0.984 | 5.93 | 1.66 | 0.883 | -- | -0.62 | -- | 1.22 | 11.4 | -- | -- | -- | -- |
| 442.58 | 0.985 | 5.93 | 1.63 | 0.887 | -- | -- | -- | 1.22 | 11.3 | -- | -- | -- | -- |
| 349.8 | 0.871 | 6.09 | 0.646 | -- | -2.7 | -- | -- | 0.494 | -- | 24.4 | 1505 | 4.14 | -- |
| 276.74 | 0.775 | 6.1 | -- | 1.58 | -4.03 | -- | -- | 0.413 | 12 | 24.5 | 1023 | 0.158 | -- |
| 491.83 | 1.04 | 5.95 | 1.61 | -- | -- | -- | -- | 1.21 | -- | -- | -- | -- | -- |
| 512.93 | 1.06 | 5.97 | -- | 0.871 | -- | -- | -- | 1.03 | 11.2 | -- | -- | -- | -- |
| 334.73 | 0.852 | 6.21 | -- | -- | -3.11 | -- | -- | 0.508 | -- | 113.1 | 1470 | 5.85 | -- |
| 560.32 | 1.1 | 5.99 | -- | -- | -- | -- | -- | 1.03 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 267.54 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 16 |
| 4 | 268.63 | temperature | 25 | 720 | < th | dose dependent | sin | 3 | NA |
| 46 | 277.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 4 |
| 54 | 278.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 1 |
| 83 | 281.86 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 89 | 282.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 15 |
| 132 | 285.37 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 198 | 288.72 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 239 | 290.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 13 |
| 295 | 291.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 320 | 292.05 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 485 | 294.49 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 503 | 294.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 11 |
| 513 | 294.73 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 899 | 298.77 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 12 |
| 908 | 298.82 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 12 |
| 939 | 299.19 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |