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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0458300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.43 (0.0268) R2 : 0.000296
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0207 (0.0564) R2dN8 : 0.000382 R2N8 : 0.000296
σ : 0.504
deviance : 116.75
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.37 0.494 3.46 -0.237 0.122 -1.02 -0.305 4.12 0.00705 3.48 1000 674 -- --
112.9 0.495 3.42 0.0185 0.137 -0.313 -0.436 -- -0.0104 3.71 1001 338 -- --
110.65 0.49 3.46 -0.231 0.121 -1.04 -- 4.18 0.00848 3.62 1000 673 -- --
113.16 0.495 3.42 -0.000639 0.145 -0.297 -- -- 0.00504 3.32 1001 340 -- --
111.43 0.492 3.46 -0.228 -- -1.01 -- 4.1 0.0118 -- 1000 693 -- --
115.17 0.503 3.43 0.0363 0.136 -- -0.37 -- -0.0208 2.89 -- -- -- --
115.63 0.504 3.42 0.0448 0.136 -- -- -- -0.0187 3.13 -- -- -- --
114.32 0.498 3.42 -0.000579 -- -0.292 -- -- 0.00451 -- 1001 340 -- --
113.16 0.495 3.42 -- 0.144 -0.297 -- -- 0.0052 3.32 1001 340 -- --
116.69 0.505 3.42 0.0505 -- -- -- -- -0.0151 -- -- -- -- --
115.69 0.503 3.43 -- 0.137 -- -- -- -0.0236 3.13 -- -- -- --
114.32 0.498 3.42 -- -- -0.293 -- -- 0.00699 -- 1001 340 -- --
116.75 0.504 3.43 -- -- -- -- -- -0.0207 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 101.59 temperature 15.0 30 > th dose independent rect. 3 23
3 103.03 atmosphere 1000.0 30 > th dose independent rect. 3 23
4 103.49 atmosphere 1005.0 90 > th dose dependent rect. 2 1
7 103.88 radiation 1.0 43200 < th dose dependent rect. 3 1
9 104.05 wind 3.0 30 < th dose dependent rect. 2 1
10 104.06 temperature 20.0 30 > th dose dependent rect. 2 1
11 104.07 wind 1.0 30 < th dose independent rect. 2 1
22 104.14 temperature 20.0 30 > th dose independent rect. 2 1
24 104.14 atmosphere 1015.0 30 < th dose dependent rect. 2 1
26 104.15 temperature 10.0 30 > th dose independent rect. 2 1
28 104.15 temperature 30.0 30 < th dose independent rect. 2 1
29 104.15 humidity 50.0 30 > th dose independent rect. 2 1
32 104.15 humidity 90.0 30 > th dose independent rect. 2 1
33 104.15 atmosphere 995.0 30 > th dose independent rect. 2 1
34 104.15 atmosphere 1010.0 30 < th dose independent rect. 2 1
36 104.15 radiation 1.0 30 < th dose independent rect. 2 1
41 104.15 precipitation 0.1 30 < th dose independent rect. 2 1
43 104.15 humidity 50.0 30 > th dose dependent rect. 2 1
45 104.15 radiation 1.0 30 < th dose dependent rect. 2 1
50 104.15 precipitation 0.1 30 < th dose dependent rect. 2 1
56 104.17 atmosphere 1005.0 30 > th dose independent rect. 2 1
65 104.27 temperature 30.0 30 < th dose dependent rect. 2 1
74 104.42 wind 1.0 30 > th dose independent rect. 2 1
115 104.68 wind 9.0 30 < th dose independent rect. 3 23
117 104.73 precipitation 0.1 30 < th dose independent rect. 3 23
118 104.73 precipitation 0.1 30 < th dose dependent rect. 3 23
132 104.85 wind 9.0 1440 < th dose independent rect. 3 1
133 104.85 temperature 10.0 1440 > th dose independent rect. 3 1
136 104.85 temperature 30.0 1440 < th dose independent rect. 3 1
140 104.85 humidity 50.0 1440 > th dose independent rect. 3 1
149 104.85 atmosphere 995.0 1440 > th dose independent rect. 3 1
150 104.85 radiation 1.0 1440 < th dose independent rect. 3 1
170 104.85 temperature 10.0 1440 > th dose independent rect. 4 23
196 106.83 humidity 50.0 30 > th dose independent rect. 3 23
199 107.03 temperature 10.0 30 > th dose dependent rect. 3 23
202 107.11 wind 1.0 30 < th dose independent rect. 23 4
203 107.13 radiation 10.0 30 < th dose dependent rect. 3 23
211 107.56 humidity 80.0 30 > th dose dependent rect. 22 5
222 107.74 wind 7.0 720 < th dose independent rect. 13 16
228 107.92 radiation 10.0 30 < th dose independent rect. 3 23
230 108.01 wind 7.0 720 > th dose dependent sin 13 NA
233 108.11 wind 1.0 30 < th dose independent rect. 14 13
237 108.17 wind 7.0 720 > th dose dependent rect. 13 15
243 108.18 wind 7.0 720 > th dose dependent rect. 13 13
255 108.24 wind 9.0 720 > th dose independent rect. 12 14
268 108.25 wind 9.0 720 > th dose independent rect. 12 11
276 108.26 wind 9.0 720 > th dose independent rect. 12 6
286 108.30 wind 7.0 720 > th dose dependent rect. 13 9
294 108.32 humidity 90.0 90 < th dose independent rect. 2 1
323 108.41 atmosphere 1000.0 720 > th dose independent rect. 23 16
342 108.54 humidity 90.0 10 > th dose independent rect. 23 4
343 108.55 temperature 25.0 10 < th dose independent rect. 23 4
344 108.56 humidity 50.0 720 > th dose independent rect. 23 16
371 108.64 wind 7.0 720 > th dose dependent rect. 15 3
396 108.72 wind 9.0 720 < th dose independent sin 16 NA
415 108.90 wind 3.0 10 < th dose dependent rect. 23 4
432 108.97 wind 7.0 720 > th dose independent sin 14 NA
440 109.03 wind 1.0 30 < th dose independent rect. 8 19
449 109.06 wind 7.0 720 > th dose independent rect. 15 13
476 109.13 wind 9.0 1440 > th dose independent rect. 13 2
499 109.21 wind 9.0 1440 < th dose independent rect. 12 3
515 109.24 humidity 50.0 4320 > th dose independent rect. 14 1
519 109.24 wind 7.0 720 < th dose independent rect. 11 17
531 109.27 precipitation 0.1 14400 < th dose independent rect. 2 1
532 109.27 atmosphere 1015.0 90 < th dose independent rect. 22 5
533 109.27 precipitation 0.1 14400 < th dose dependent rect. 2 1
556 109.32 temperature 30.0 90 < th dose dependent rect. 22 5
575 109.36 wind 7.0 720 < th dose independent rect. 9 20
582 109.38 wind 7.0 720 < th dose independent rect. 7 22
584 109.40 temperature 30.0 720 < th dose dependent rect. 22 1
595 109.43 atmosphere 1000.0 720 > th dose independent rect. 3 23
613 109.46 temperature 10.0 10 > th dose dependent rect. 17 9
621 109.48 precipitation 0.1 14400 > th dose independent rect. 2 1
624 109.49 temperature 15.0 10 > th dose independent rect. 17 9
632 109.50 humidity 80.0 14400 < th dose dependent rect. 2 7
636 109.51 wind 9.0 30 < th dose dependent rect. 3 23
650 109.55 atmosphere 1000.0 90 > th dose independent rect. 3 19
653 109.56 atmosphere 1015.0 270 < th dose independent rect. 23 1
664 109.59 wind 7.0 720 < th dose independent rect. 13 8
675 109.60 wind 7.0 720 < th dose independent rect. 23 23
677 109.61 temperature 30.0 30 < th dose independent rect. 3 23
678 109.61 precipitation 0.1 14400 > th dose dependent rect. 2 1
682 109.62 humidity 80.0 270 > th dose independent rect. 23 1
685 109.62 temperature 30.0 10 < th dose dependent rect. 22 12
686 109.63 wind 3.0 14400 > th dose independent rect. 10 1
711 109.64 humidity 50.0 1440 > th dose independent rect. 17 10
730 109.66 humidity 50.0 1440 > th dose independent rect. 17 17
731 109.66 temperature 15.0 270 > th dose independent rect. 24 23
736 109.67 atmosphere 1000.0 14400 > th dose independent rect. 7 1
747 109.68 humidity 50.0 1440 > th dose independent rect. 17 2
755 109.69 atmosphere 1000.0 14400 < th dose independent rect. 6 1
757 109.69 radiation 20.0 720 > th dose independent rect. 16 1
775 109.69 humidity 50.0 1440 < th dose independent rect. 17 17
790 109.71 humidity 50.0 1440 > th dose independent rect. 17 7
793 109.71 atmosphere 1000.0 720 > th dose independent rect. 3 17
810 109.73 atmosphere 1000.0 720 > th dose independent rect. 16 23
816 109.73 humidity 50.0 1440 < th dose dependent rect. 17 17
818 109.73 humidity 50.0 1440 < th dose dependent rect. 16 19
830 109.75 humidity 50.0 1440 < th dose independent rect. 17 1
862 109.76 humidity 50.0 1440 < th dose dependent rect. 17 1
906 109.81 atmosphere 1000.0 14400 > th dose independent rect. 9 1
913 109.81 temperature 15.0 720 > th dose independent rect. 15 8
920 109.82 humidity 50.0 4320 < th dose independent rect. 14 1
923 109.82 atmosphere 1000.0 720 > th dose independent rect. 17 8
957 109.85 atmosphere 1000.0 720 > th dose independent rect. 13 23
958 109.85 humidity 70.0 270 > th dose dependent rect. 23 1
963 109.86 wind 9.0 4320 < th dose independent rect. 24 4
972 109.86 atmosphere 1000.0 720 > th dose independent rect. 23 23
988 109.88 humidity 70.0 720 < th dose dependent rect. 18 14