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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0457700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.23 (0.0446) R2 : 0.42
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.35 (0.132) R2dC : 0.187 R2C : -0.0769
β3 : -1.89 (0.153) R2dE : 0.296 R2E : 0.107
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.771 (0.0984) R2dN8 : 0.113 R2N8 : 0.176
σ : 0.83
deviance : 317.75
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_____
C
peak time of C : 8.63
E
wheather : temperature
threshold : 23.9
memory length : 379
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 22.4
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
317.33 0.837 5.21 0.17 1.32 -1.86 0.367 -0.348 0.807 8.64 23.9 379 22.2 --
317.46 0.83 5.22 0.116 1.32 -1.85 0.0817 -- 0.802 8.62 23.92 378 22.4 --
317.45 0.83 5.22 0.12 1.34 -1.87 -- -0.0528 0.795 8.63 23.95 379 22.4 --
317.45 0.83 5.22 0.109 1.34 -1.87 -- -- 0.785 8.61 23.97 378 22.4 --
356.76 0.88 5.27 0.151 -- -1.52 -- -0.527 0.713 -- 23.7 1740 22.4 --
411.23 0.951 5.15 0.536 0.57 -- 0.7 -- 1.22 6.73 -- -- -- --
412.47 0.951 5.15 0.547 0.573 -- -- -- 1.22 6.69 -- -- -- --
356.44 0.879 5.27 0.0136 -- -1.46 -- -- 0.725 -- 23.8 1733 21.3 --
317.75 0.83 5.23 -- 1.35 -1.89 -- -- 0.771 8.63 23.9 379 22.4 --
429.58 0.968 5.16 0.561 -- -- -- -- 1.23 -- -- -- -- --
420.36 0.959 5.16 -- 0.58 -- -- -- 1.16 6.63 -- -- -- --
356.25 0.879 5.27 -- -- -1.52 -- -- 0.691 -- 23.71 1741 21.2 --
437.88 0.977 5.17 -- -- -- -- -- 1.17 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 324.36 temperature 30 270 < th dose dependent sin 5 NA
3 326.30 temperature 20 270 > th dose dependent sin 6 NA
5 328.18 temperature 20 270 > th dose dependent rect. 24 13
7 328.97 temperature 30 270 < th dose dependent rect. 22 14
8 329.17 temperature 30 270 < th dose dependent rect. 3 10
14 329.95 temperature 20 14400 < th dose dependent rect. 23 1
16 330.07 wind 1 43200 < th dose dependent rect. 22 5
20 330.53 wind 1 14400 < th dose dependent rect. 22 8
34 331.78 temperature 25 720 < th dose dependent rect. 20 16
44 332.57 temperature 25 270 < th dose independent rect. 5 7
59 333.11 radiation 20 43200 < th dose independent rect. 15 1
81 333.66 temperature 20 14400 < th dose dependent rect. 18 10
120 334.39 radiation 10 43200 > th dose dependent rect. 15 1
121 334.43 temperature 20 14400 < th dose dependent sin 14 NA
125 334.48 humidity 60 43200 < th dose independent rect. 20 16
133 334.55 temperature 30 90 < th dose dependent rect. 6 7
150 334.72 temperature 20 720 > th dose dependent rect. 24 6
154 334.76 radiation 20 43200 < th dose independent rect. 15 12
159 334.77 radiation 20 43200 < th dose independent rect. 15 10
188 334.95 temperature 20 14400 < th dose dependent rect. 3 1
198 335.03 humidity 60 43200 < th dose independent rect. 24 12
216 335.21 humidity 60 43200 < th dose independent rect. 8 4
248 335.31 temperature 20 14400 < th dose dependent rect. 21 12
309 335.49 radiation 10 43200 < th dose dependent rect. 16 16
359 335.73 humidity 60 43200 > th dose independent rect. 20 16
374 335.75 humidity 60 43200 < th dose independent rect. 6 6
401 335.82 radiation 40 43200 > th dose dependent rect. 13 19
447 335.96 radiation 40 43200 > th dose dependent rect. 13 3
475 335.99 temperature 20 14400 < th dose dependent no NA NA
497 336.06 temperature 20 14400 < th dose dependent rect. 2 23
564 336.40 radiation 40 43200 < th dose dependent rect. 15 16
566 336.42 radiation 1 14400 < th dose independent rect. 9 3
596 336.54 radiation 1 14400 > th dose independent rect. 9 3
605 336.61 radiation 40 43200 < th dose dependent rect. 15 2
608 336.63 humidity 60 43200 > th dose independent rect. 8 4
778 337.31 temperature 20 14400 > th dose independent rect. 2 1
784 337.38 humidity 70 43200 < th dose dependent rect. 8 2
814 337.45 radiation 30 43200 < th dose dependent rect. 15 12
822 337.46 radiation 30 43200 < th dose dependent rect. 15 10
842 337.47 temperature 10 720 > th dose dependent rect. 23 7
866 337.52 radiation 30 43200 < th dose independent sin 15 NA
889 337.63 radiation 10 43200 < th dose dependent rect. 6 1
899 337.67 humidity 70 43200 < th dose dependent rect. 21 13
919 337.75 temperature 20 14400 < th dose independent rect. 2 1
926 337.79 radiation 10 43200 < th dose dependent sin 12 NA
941 337.86 radiation 20 43200 > th dose dependent sin 14 NA
1000 338.04 radiation 1 43200 > th dose dependent sin 14 NA