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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0455200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Winged helix repressor DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0181) R2 : 0.00498
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0577 (0.0382) R2dN8 : 0.00643 R2N8 : 0.00498
σ : 0.342
deviance : 53.62
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.36 0.337 3.05 0.16 0.135 -0.171 -0.0942 -0.642 0.0144 6.55 69 5846 -- --
51.9 0.336 3.04 0.0748 0.133 -0.186 -0.105 -- 4.44e-05 6.46 79.25 6949 -- --
51.38 0.334 3.05 0.159 0.135 -0.171 -- -0.642 0.0143 6.67 69.27 5858 -- --
51.89 0.336 3.05 0.0945 0.136 -0.206 -- -- -0.00581 6.94 81 6949 -- --
52.31 0.337 3.05 0.159 -- -0.176 -- -0.624 0.0143 -- 69 5749 -- --
52.59 0.34 3.03 0.0484 0.135 -- -0.105 -- 0.0602 6.51 -- -- -- --
52.61 0.34 3.03 0.0472 0.134 -- -- -- 0.0607 6.69 -- -- -- --
52.84 0.339 3.05 0.085 -- -0.208 -- -- -0.00753 -- 80.98 7005 -- --
52.06 0.336 3.05 -- 0.135 -0.193 -- -- -0.0136 7 80 6949 -- --
53.55 0.342 3.03 0.0503 -- -- -- -- 0.0633 -- -- -- -- --
52.67 0.339 3.03 -- 0.135 -- -- -- 0.0554 6.67 -- -- -- --
53.02 0.339 3.05 -- -- -0.184 -- -- -0.00945 -- 80 7012 -- --
53.62 0.342 3.03 -- -- -- -- -- 0.0577 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.61 temperature 25.0 90 > th dose independent rect. 24 7
2 50.77 temperature 25.0 30 > th dose dependent rect. 24 7
3 50.84 humidity 90.0 90 < th dose independent rect. 24 7
4 50.86 atmosphere 995.0 720 > th dose independent rect. 7 8
5 50.87 temperature 25.0 30 > th dose dependent rect. 6 1
6 50.90 wind 3.0 30 > th dose dependent rect. 6 1
8 50.93 temperature 25.0 270 > th dose dependent rect. 23 8
9 50.94 atmosphere 1010.0 30 < th dose independent rect. 6 1
12 50.96 wind 9.0 720 < th dose independent rect. 19 8
14 50.98 radiation 10.0 30 < th dose independent rect. 6 1
15 50.99 radiation 40.0 720 < th dose independent rect. 15 16
16 51.00 temperature 10.0 720 > th dose independent rect. 19 8
17 51.00 temperature 30.0 720 < th dose independent rect. 19 8
18 51.00 humidity 50.0 720 > th dose independent rect. 19 8
20 51.00 atmosphere 995.0 720 > th dose independent rect. 19 8
21 51.00 radiation 1.0 720 < th dose independent rect. 19 8
26 51.00 temperature 10.0 720 > th dose independent rect. 3 16
27 51.00 radiation 1.0 720 < th dose dependent rect. 19 8
32 51.01 humidity 90.0 720 > th dose independent rect. 3 1
33 51.01 temperature 10.0 720 > th dose independent rect. 7 8
34 51.01 atmosphere 1015.0 720 < th dose independent rect. 7 8
35 51.01 temperature 10.0 720 > th dose independent rect. 15 16
38 51.04 temperature 25.0 270 > th dose independent rect. 22 9
39 51.06 atmosphere 1010.0 30 < th dose dependent rect. 6 1
40 51.07 temperature 25.0 720 > th dose independent rect. 24 1
43 51.08 precipitation 0.1 720 < th dose independent rect. 19 8
44 51.08 precipitation 0.1 720 < th dose dependent rect. 19 8
47 51.09 atmosphere 1015.0 720 < th dose independent rect. 3 16
48 51.09 precipitation 0.1 720 < th dose independent rect. 15 16
49 51.09 precipitation 0.1 720 < th dose dependent rect. 15 16
54 51.12 atmosphere 995.0 30 > th dose independent rect. 3 23
58 51.15 wind 1.0 30 < th dose dependent rect. 2 1
59 51.16 wind 3.0 30 > th dose independent rect. 6 1
60 51.16 wind 1.0 10 < th dose independent rect. 2 1
61 51.16 temperature 25.0 90 > th dose independent rect. 24 3
63 51.17 atmosphere 1010.0 30 < th dose dependent rect. 2 1
66 51.18 atmosphere 1005.0 10 > th dose dependent rect. 2 2
68 51.19 atmosphere 1005.0 30 > th dose dependent rect. 24 4
70 51.20 wind 9.0 720 < th dose independent rect. 15 16
72 51.22 wind 9.0 30 < th dose independent rect. 3 23
83 51.25 humidity 80.0 4320 < th dose dependent rect. 23 2
89 51.26 temperature 10.0 30 > th dose independent rect. 2 1
91 51.26 temperature 25.0 10 < th dose independent rect. 2 1
94 51.26 humidity 50.0 30 > th dose independent rect. 2 1
98 51.26 atmosphere 995.0 30 > th dose independent rect. 2 1
99 51.26 atmosphere 1010.0 30 < th dose independent rect. 2 1
101 51.26 radiation 1.0 30 < th dose independent rect. 2 1
106 51.26 precipitation 0.1 30 < th dose independent rect. 2 1
108 51.26 temperature 10.0 30 > th dose independent rect. 3 23
110 51.26 temperature 10.0 30 > th dose dependent rect. 2 1
111 51.26 temperature 25.0 720 > th dose dependent rect. 24 1
112 51.26 temperature 30.0 30 < th dose dependent rect. 2 1
113 51.26 humidity 50.0 30 > th dose dependent rect. 2 1
118 51.26 radiation 1.0 30 < th dose dependent rect. 2 1
123 51.26 precipitation 0.1 30 < th dose dependent rect. 2 1
131 51.27 humidity 90.0 90 < th dose dependent rect. 2 5
163 51.29 humidity 90.0 720 < th dose independent rect. 24 1
166 51.29 atmosphere 995.0 30 > th dose dependent rect. 2 1
185 51.34 humidity 80.0 4320 < th dose independent rect. 24 1
188 51.34 wind 9.0 720 < th dose independent rect. 7 8
196 51.35 wind 1.0 30 > th dose independent rect. 2 1
201 51.36 temperature 25.0 1440 < th dose independent rect. 24 1
205 51.36 humidity 80.0 14400 < th dose dependent rect. 3 6
213 51.39 precipitation 0.1 720 < th dose independent rect. 7 8
217 51.39 precipitation 0.1 720 < th dose dependent rect. 7 8
226 51.42 humidity 80.0 4320 > th dose independent rect. 24 1
229 51.42 humidity 80.0 14400 < th dose dependent rect. 22 12
236 51.44 atmosphere 995.0 720 > th dose independent rect. 23 16
237 51.44 humidity 90.0 90 < th dose independent rect. 24 21
245 51.45 temperature 25.0 90 > th dose independent rect. 5 2
250 51.46 humidity 70.0 14400 > th dose independent rect. 8 2
251 51.46 humidity 90.0 90 < th dose independent rect. 2 2
266 51.46 atmosphere 995.0 720 > th dose independent rect. 3 16
273 51.47 humidity 80.0 720 > th dose dependent rect. 3 1
274 51.47 humidity 90.0 30 < th dose dependent rect. 6 1
275 51.47 wind 3.0 30 < th dose dependent rect. 24 3
280 51.48 humidity 90.0 720 < th dose independent rect. 24 7
281 51.48 wind 1.0 1440 < th dose dependent rect. 20 2
285 51.48 temperature 25.0 30 > th dose dependent rect. 20 11
288 51.49 humidity 70.0 14400 < th dose independent rect. 8 2
319 51.52 temperature 25.0 720 < th dose independent rect. 23 6
322 51.52 humidity 90.0 90 < th dose independent rect. 24 17
337 51.53 temperature 20.0 30 > th dose dependent rect. 24 3
341 51.54 humidity 80.0 4320 > th dose dependent rect. 7 2
349 51.55 atmosphere 995.0 30 > th dose independent rect. 3 21
358 51.55 wind 9.0 30 < th dose dependent rect. 3 21
359 51.55 atmosphere 1015.0 30 < th dose dependent rect. 6 21
370 51.56 atmosphere 1015.0 720 < th dose dependent rect. 6 1
374 51.57 wind 3.0 30 < th dose independent rect. 24 3
377 51.57 temperature 25.0 90 < th dose independent rect. 21 9
380 51.57 wind 9.0 720 < th dose independent rect. 3 16
392 51.58 atmosphere 995.0 90 > th dose independent rect. 7 23
408 51.59 atmosphere 1000.0 10 > th dose independent rect. 8 22
412 51.59 humidity 50.0 4320 > th dose dependent rect. 7 1
415 51.59 radiation 10.0 30 < th dose dependent rect. 6 1
442 51.60 humidity 70.0 4320 > th dose independent rect. 14 4
444 51.60 temperature 25.0 270 < th dose independent rect. 20 14
446 51.60 radiation 40.0 720 > th dose independent rect. 14 20
467 51.60 wind 9.0 30 < th dose dependent rect. 3 23
478 51.61 radiation 1.0 90 < th dose independent rect. 3 21
481 51.61 humidity 90.0 90 < th dose dependent rect. 2 1
500 51.61 atmosphere 995.0 30 > th dose dependent rect. 3 21
501 51.62 wind 1.0 30 < th dose independent rect. 6 1
504 51.62 humidity 70.0 4320 < th dose independent rect. 14 3
507 51.62 humidity 70.0 4320 > th dose independent rect. 8 9
511 51.62 humidity 70.0 4320 > th dose independent rect. 5 12
548 51.62 humidity 80.0 30 > th dose dependent rect. 3 21
550 51.63 radiation 40.0 720 > th dose independent rect. 9 1
557 51.63 humidity 70.0 4320 > th dose independent rect. 10 8
566 51.63 radiation 40.0 90 > th dose independent rect. 14 21
568 51.63 radiation 1.0 10 > th dose dependent rect. 6 1
577 51.64 temperature 25.0 270 > th dose independent sin 10 NA
579 51.64 humidity 70.0 4320 > th dose independent rect. 16 1
599 51.64 radiation 20.0 270 > th dose independent rect. 14 19
600 51.64 humidity 80.0 14400 < th dose dependent sin 8 NA
601 51.64 temperature 25.0 720 > th dose dependent rect. 8 1
625 51.65 wind 3.0 14400 > th dose independent rect. 11 1
649 51.65 precipitation 0.1 720 < th dose independent rect. 9 8
654 51.65 wind 9.0 4320 > th dose independent rect. 3 11
660 51.65 wind 9.0 4320 < th dose independent rect. 1 13
665 51.65 wind 9.0 4320 > th dose independent rect. 23 15
688 51.65 precipitation 0.1 720 < th dose dependent rect. 9 8
698 51.65 radiation 10.0 10 < th dose dependent rect. 3 23
699 51.66 temperature 25.0 270 < th dose independent sin 10 NA
700 51.66 humidity 70.0 4320 > th dose independent sin 23 NA
704 51.66 wind 3.0 14400 < th dose independent rect. 11 1
724 51.66 humidity 90.0 720 < th dose independent rect. 24 12
728 51.66 humidity 90.0 1440 < th dose independent rect. 24 14
731 51.66 humidity 90.0 720 < th dose independent rect. 24 16
732 51.66 atmosphere 995.0 720 > th dose independent rect. 15 16
739 51.66 humidity 70.0 4320 > th dose dependent sin 2 NA
788 51.67 humidity 70.0 4320 < th dose independent rect. 10 7
829 51.67 humidity 90.0 90 < th dose independent rect. 24 14
839 51.67 radiation 40.0 720 < th dose independent rect. 17 16
861 51.67 precipitation 0.1 30 < th dose independent rect. 3 23
880 51.67 wind 5.0 30 < th dose dependent rect. 3 10
886 51.67 atmosphere 1015.0 30 < th dose dependent rect. 6 15
888 51.67 temperature 10.0 30 > th dose dependent rect. 6 21
890 51.67 humidity 80.0 30 > th dose dependent rect. 3 23
892 51.67 precipitation 0.1 30 < th dose dependent rect. 3 23
893 51.68 wind 9.0 4320 > th dose independent sin 5 NA
904 51.68 humidity 90.0 4320 < th dose independent rect. 8 1
908 51.68 temperature 20.0 30 > th dose independent rect. 3 3
935 51.68 wind 5.0 14400 < th dose dependent rect. 11 1
936 51.68 wind 1.0 720 < th dose dependent rect. 24 1
941 51.68 humidity 90.0 10 < th dose dependent rect. 3 1
949 51.68 temperature 15.0 30 > th dose dependent rect. 3 3
952 51.68 radiation 1.0 720 < th dose dependent rect. 21 8
960 51.68 atmosphere 1015.0 10 < th dose dependent rect. 6 12
965 51.68 radiation 10.0 30 < th dose dependent rect. 3 21
968 51.69 humidity 70.0 4320 > th dose independent no NA NA