Os09g0454100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rhomboid-like protein family protein.
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Os09g0454100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rhomboid-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.78 | 0.187 | 12.6 | -1.17 | 0.426 | 0.572 | 0.0166 | -0.543 | -0.373 | 7.6 | 24.59 | 1377 | -- | -- |
| 15.88 | 0.186 | 12.6 | -1.32 | 0.419 | 0.492 | 0.0304 | -- | -0.437 | 7.45 | 24.1 | 1262 | -- | -- |
| 15.62 | 0.184 | 12.6 | -1.18 | 0.428 | 0.521 | -- | -0.367 | -0.39 | 7.43 | 24.2 | 1297 | -- | -- |
| 15.88 | 0.186 | 12.6 | -1.34 | 0.415 | 0.49 | -- | -- | -0.434 | 7.43 | 24.1 | 1262 | -- | -- |
| 22.53 | 0.221 | 12.6 | -1.11 | -- | 0.552 | -- | -0.532 | -0.357 | -- | 23.91 | 2081 | -- | -- |
| 25.64 | 0.237 | 12.7 | -1.53 | 0.401 | -- | 0.0304 | -- | -0.622 | 8.16 | -- | -- | -- | -- |
| 25.64 | 0.237 | 12.7 | -1.53 | 0.401 | -- | -- | -- | -0.622 | 8.15 | -- | -- | -- | -- |
| 22.94 | 0.223 | 12.6 | -1.3 | -- | 0.521 | -- | -- | -0.395 | -- | 23.74 | 2083 | -- | -- |
| 19.03 | 0.203 | 12.6 | -- | 0.396 | 1.31 | -- | -- | -0.14 | 7.97 | 18.5 | 47520 | -- | -- |
| 34.5 | 0.274 | 12.7 | -1.52 | -- | -- | -- | -- | -0.617 | -- | -- | -- | -- | -- |
| 86.96 | 0.436 | 12.7 | -- | 0.394 | -- | -- | -- | -0.452 | 8.43 | -- | -- | -- | -- |
| 27.59 | 0.245 | 12.6 | -- | -- | 1.31 | -- | -- | -0.135 | -- | 18.42 | 47520 | -- | -- |
| 95.6 | 0.456 | 12.7 | -- | -- | -- | -- | -- | -0.448 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.54 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 21 |
| 20 | 16.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 31 | 16.11 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 45 | 16.16 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 50 | 16.16 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 51 | 16.17 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 16 |
| 54 | 16.17 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 79 | 16.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 104 | 16.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 110 | 16.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 111 | 16.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 123 | 16.25 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 140 | 16.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 6 |
| 180 | 16.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 8 |
| 201 | 16.29 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 236 | 16.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 6 |
| 253 | 16.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 322 | 16.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 18 |
| 367 | 16.35 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 11 |
| 369 | 16.35 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 15 |
| 494 | 16.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 8 |
| 611 | 16.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 648 | 16.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 710 | 16.45 | temperature | 25 | 4320 | < th | dose dependent | rect. | 8 | 19 |
| 713 | 16.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 742 | 16.46 | temperature | 25 | 4320 | < th | dose dependent | rect. | 9 | 17 |
| 766 | 16.47 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 768 | 16.47 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 805 | 16.48 | temperature | 25 | 1440 | < th | dose independent | rect. | 4 | 22 |
| 841 | 16.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 920 | 16.50 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 984 | 16.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 8 |