Os09g0453900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Immunoglobulin/major histocompatibility complex family protein.
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Os09g0453900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Immunoglobulin/major histocompatibility complex family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.99 | 0.364 | 9.58 | -0.365 | 2.21 | -0.904 | 0.608 | 2.34 | -0.365 | 6.69 | 18.59 | 240 | -- | -- |
| 64.26 | 0.373 | 9.63 | -0.763 | 2.18 | -0.967 | 0.105 | -- | -0.475 | 6.56 | 12 | 327 | -- | -- |
| 60.84 | 0.363 | 9.58 | -0.372 | 2.21 | -0.926 | -- | 2.21 | -0.371 | 6.68 | 18.4 | 232 | -- | -- |
| 64.18 | 0.373 | 9.62 | -0.739 | 2.2 | -0.862 | -- | -- | -0.463 | 6.59 | 16.67 | 330 | -- | -- |
| 200.77 | 0.66 | 9.57 | 0.515 | -- | -3.09 | -- | 7.22 | -0.122 | -- | 24.76 | 474 | -- | -- |
| 73.71 | 0.402 | 9.66 | -0.977 | 2.46 | -- | 0.211 | -- | -0.622 | 6.42 | -- | -- | -- | -- |
| 73.82 | 0.402 | 9.66 | -0.975 | 2.46 | -- | -- | -- | -0.623 | 6.41 | -- | -- | -- | -- |
| 220.49 | 0.692 | 9.66 | -0.506 | -- | -2.38 | -- | -- | -0.365 | -- | 24.37 | 446 | -- | -- |
| 78.36 | 0.412 | 9.6 | -- | 2.1 | -1.15 | -- | -- | -0.353 | 6.65 | 17.19 | 327 | -- | -- |
| 388.29 | 0.921 | 9.71 | -0.911 | -- | -- | -- | -- | -0.571 | -- | -- | -- | -- | -- |
| 98.84 | 0.465 | 9.63 | -- | 2.45 | -- | -- | -- | -0.514 | 6.43 | -- | -- | -- | -- |
| 226.65 | 0.701 | 9.64 | -- | -- | -2.48 | -- | -- | -0.276 | -- | 24.3 | 447 | -- | -- |
| 410.19 | 0.945 | 9.68 | -- | -- | -- | -- | -- | -0.47 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 8 |
| 7 | 52.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 7 |
| 10 | 52.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 9 |
| 12 | 52.89 | temperature | 30 | 30 | < th | dose dependent | sin | 15 | NA |
| 13 | 52.95 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 15 |
| 17 | 53.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 14 |
| 36 | 53.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 88 | 55.49 | temperature | 10 | 90 | > th | dose dependent | sin | 15 | NA |
| 91 | 55.59 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 8 |
| 96 | 55.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 115 | 56.01 | radiation | 1 | 90 | < th | dose dependent | rect. | 16 | 8 |
| 123 | 56.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 15 |
| 132 | 56.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 147 | 56.38 | radiation | 1 | 90 | < th | dose independent | rect. | 16 | 8 |
| 204 | 56.74 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 11 |
| 249 | 57.04 | radiation | 1 | 90 | < th | dose dependent | sin | 17 | NA |
| 268 | 57.17 | temperature | 20 | 10 | < th | dose independent | sin | 12 | NA |
| 290 | 57.28 | temperature | 20 | 90 | > th | dose dependent | sin | 17 | NA |
| 301 | 57.35 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 12 |
| 336 | 57.46 | radiation | 1 | 90 | < th | dose dependent | rect. | 8 | 16 |
| 356 | 57.54 | radiation | 1 | 270 | > th | dose independent | sin | 21 | NA |
| 392 | 57.72 | radiation | 1 | 90 | < th | dose independent | sin | 17 | NA |
| 407 | 57.76 | temperature | 20 | 90 | < th | dose independent | sin | 13 | NA |
| 413 | 57.78 | radiation | 1 | 90 | < th | dose independent | rect. | 8 | 16 |
| 445 | 57.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 14 |
| 455 | 57.87 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 21 |
| 472 | 57.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 512 | 58.06 | radiation | 1 | 90 | > th | dose independent | sin | 17 | NA |
| 516 | 58.06 | radiation | 20 | 270 | < th | dose dependent | rect. | 15 | 8 |
| 548 | 58.14 | humidity | 60 | 90 | > th | dose independent | rect. | 17 | 7 |
| 626 | 58.32 | radiation | 1 | 270 | < th | dose independent | sin | 20 | NA |
| 627 | 58.32 | radiation | 1 | 270 | < th | dose dependent | sin | 20 | NA |
| 630 | 58.33 | temperature | 20 | 10 | > th | dose independent | rect. | 14 | 14 |
| 762 | 58.67 | temperature | 10 | 30 | > th | dose dependent | rect. | 24 | 19 |
| 776 | 58.70 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 24 | 19 |
| 807 | 58.77 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 8 |
| 924 | 59.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 980 | 59.10 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 9 |