Os09g0453400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase S26A, signal peptidase I family protein.
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Os09g0453400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase S26A, signal peptidase I family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.38 | 0.313 | 12.7 | 0.483 | 0.499 | -0.856 | -0.444 | 1.2 | 0.318 | 4.86 | 24 | 734 | -- | -- |
| 44.94 | 0.312 | 12.7 | 0.266 | 0.492 | -0.756 | -0.527 | -- | 0.261 | 5.05 | 23.9 | 708 | -- | -- |
| 44.76 | 0.312 | 12.7 | 0.497 | 0.513 | -0.823 | -- | 1.32 | 0.324 | 5.14 | 23.84 | 739 | -- | -- |
| 45.47 | 0.314 | 12.7 | 0.248 | 0.536 | -0.694 | -- | -- | 0.257 | 5.36 | 23.9 | 740 | -- | -- |
| 50.69 | 0.332 | 12.7 | 0.589 | -- | -1.19 | -- | 1.84 | 0.384 | -- | 23.74 | 485 | -- | -- |
| 55.51 | 0.349 | 12.8 | 0.0867 | 0.744 | -- | 0.0468 | -- | 0.172 | 6.26 | -- | -- | -- | -- |
| 55.52 | 0.349 | 12.8 | 0.0871 | 0.744 | -- | -- | -- | 0.172 | 6.25 | -- | -- | -- | -- |
| 52.73 | 0.338 | 12.7 | 0.301 | -- | -1.04 | -- | -- | 0.296 | -- | 24.1 | 498 | -- | -- |
| 46.99 | 0.319 | 12.8 | -- | 0.552 | -0.632 | -- | -- | 0.216 | 5.46 | 24.1 | 737 | -- | -- |
| 84.23 | 0.429 | 12.8 | 0.107 | -- | -- | -- | -- | 0.188 | -- | -- | -- | -- | -- |
| 55.72 | 0.349 | 12.8 | -- | 0.745 | -- | -- | -- | 0.162 | 6.24 | -- | -- | -- | -- |
| 55.04 | 0.346 | 12.8 | -- | -- | -0.996 | -- | -- | 0.257 | -- | 24.2 | 488 | -- | -- |
| 84.54 | 0.429 | 12.8 | -- | -- | -- | -- | -- | 0.176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.67 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 2 | 41.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 5 |
| 6 | 42.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 6 |
| 14 | 42.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 16 | 42.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 28 | 42.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 8 |
| 61 | 43.05 | temperature | 15 | 720 | > th | dose dependent | sin | 21 | NA |
| 106 | 43.34 | temperature | 15 | 270 | > th | dose dependent | sin | 18 | NA |
| 125 | 43.50 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 159 | 43.62 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 163 | 43.63 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 13 |
| 262 | 44.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 19 |
| 263 | 44.05 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 269 | 44.08 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 14 |
| 382 | 44.34 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 526 | 44.69 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 12 |
| 528 | 44.69 | temperature | 30 | 90 | < th | dose dependent | sin | 16 | NA |
| 553 | 44.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 13 |
| 573 | 44.78 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 22 |
| 589 | 44.81 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 607 | 44.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 611 | 44.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 616 | 44.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 14 |
| 620 | 44.87 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 625 | 44.87 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 645 | 44.89 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 704 | 44.98 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 2 |
| 714 | 44.99 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 755 | 45.05 | humidity | 60 | 720 | > th | dose independent | rect. | 16 | 15 |
| 787 | 45.07 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 806 | 45.10 | temperature | 25 | 720 | > th | dose independent | sin | 21 | NA |
| 872 | 45.20 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 8 |
| 932 | 45.31 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 970 | 45.36 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 15 |
| 982 | 45.37 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 17 |
| 994 | 45.38 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 9 |