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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0453300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Annexin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.39 (0.0411) R2 : 0.466
β1 : -1.89 (0.156) R2dD : 0.202 R2D : 0.303
β2 : -- (--) R2dC : -- R2C : --
β3 : 2 (0.187) R2dE : 0.175 R2E : 0.252
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.128 (0.0947) R2dN8 : 0.00347 R2N8 : -0.0042
σ : 0.749
deviance : 258.93
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.6
memory length : 822
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
233.87 0.719 3.34 -1.49 0.775 1.42 -1.56 -2.9 0.145 12.2 25.41 301 -- --
237.31 0.717 3.4 -1.87 0.479 1.83 -1.38 -- 0.0537 10.5 24.19 989 -- --
238.26 0.719 3.34 -1.49 0.494 1.51 -- -2.68 0.17 12.5 25.59 695 -- --
245.74 0.73 3.4 -1.93 0.496 1.84 -- -- 0.0445 11.8 23.93 772 -- --
250.12 0.737 3.32 -1.38 -- 1.8 -- -2.84 0.255 -- 26.87 789 -- --
283.39 0.789 3.47 -2.39 0.691 -- -1.56 -- -0.299 10.8 -- -- -- --
292.87 0.801 3.47 -2.45 0.703 -- -- -- -0.301 11.5 -- -- -- --
258.93 0.749 3.39 -1.89 -- 2 -- -- 0.128 -- 25.6 822 -- --
257.16 0.747 3.29 -- 0.673 2.34 -- -- 0.478 11.4 20.76 47520 -- --
323.92 0.841 3.49 -2.47 -- -- -- -- -0.309 -- -- -- -- --
450.95 0.993 3.41 -- 0.731 -- -- -- -0.0287 11.7 -- -- -- --
285.54 0.787 3.31 -- -- 2.36 -- -- 0.488 -- 21 47520 -- --
484.58 1.03 3.42 -- -- -- -- -- -0.0352 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 228.79 temperature 30 90 < th dose dependent rect. 19 22
2 228.84 temperature 30 90 < th dose dependent rect. 20 19
7 229.69 temperature 30 720 < th dose dependent rect. 20 19
19 230.85 temperature 25 270 < th dose dependent rect. 2 21
22 231.01 temperature 30 90 < th dose dependent rect. 11 23
39 231.99 temperature 10 270 > th dose dependent rect. 7 23
45 232.24 temperature 10 720 > th dose dependent rect. 16 19
81 233.29 temperature 15 90 > th dose dependent rect. 21 23
82 233.29 temperature 30 270 < th dose dependent rect. 9 23
87 233.40 temperature 10 1440 > th dose dependent rect. 11 1
89 233.44 temperature 30 90 < th dose dependent rect. 20 15
109 233.70 temperature 30 1440 < th dose dependent rect. 8 4
120 233.83 temperature 30 1440 < th dose dependent rect. 10 2
126 233.93 temperature 30 270 < th dose dependent sin 7 NA
136 234.09 temperature 15 1440 > th dose dependent rect. 8 4
139 234.10 temperature 25 270 < th dose dependent no NA NA
144 234.18 temperature 10 270 > th dose dependent sin 8 NA
148 234.21 temperature 15 30 > th dose dependent rect. 8 23
173 234.41 temperature 15 270 > th dose dependent rect. 15 23
195 234.63 temperature 10 90 > th dose dependent no NA NA
214 234.79 temperature 25 10 < th dose independent rect. 6 9
215 234.79 temperature 30 720 < th dose dependent rect. 19 13
242 235.03 temperature 25 720 < th dose dependent rect. 4 13
264 235.12 temperature 30 30 < th dose dependent rect. 13 23
269 235.17 temperature 25 720 < th dose dependent rect. 4 15
325 235.53 temperature 15 270 > th dose dependent rect. 18 23
345 235.67 temperature 30 30 < th dose dependent rect. 9 23
458 236.29 temperature 25 720 < th dose dependent sin 1 NA
584 236.87 temperature 30 90 < th dose dependent rect. 5 10
723 237.52 temperature 15 90 > th dose dependent rect. 10 23
724 237.53 temperature 30 720 < th dose dependent sin 10 NA
771 237.69 temperature 10 720 > th dose dependent rect. 23 21
889 238.05 temperature 10 720 > th dose dependent sin 11 NA
969 238.29 temperature 10 1440 > th dose dependent sin 4 NA