Os09g0452400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os09g0452400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 228.12 | 0.71 | 2.93 | 0.451 | 0.0875 | 25.2 | 0.987 | 117 | -0.135 | 12.8 | 7.025 | 274 | 20 | 0.984 |
| 245.11 | 0.729 | 2.84 | -0.0968 | 0.0987 | 3.51 | -0.399 | -- | -0.148 | 21.6 | 6.603 | 19 | 23.6 | 1.66 |
| 230.59 | 0.707 | 2.92 | 0.484 | 0.191 | 25.9 | -- | 120 | -0.0872 | 16.4 | 7.199 | 294 | 20 | 0.975 |
| 244.43 | 0.728 | 2.83 | -0.0093 | 0.212 | 3.44 | -- | -- | -0.13 | 17.7 | 6.48 | 25 | 23.8 | 0.949 |
| 232.4 | 0.71 | 2.93 | 0.501 | -- | 25.9 | -- | 120 | -0.131 | -- | 7.192 | 303 | 20 | 0.957 |
| 256.13 | 0.75 | 2.83 | 0.0408 | 0.211 | -- | 0.124 | -- | -0.135 | 17.8 | -- | -- | -- | -- |
| 256.14 | 0.749 | 2.83 | 0.0394 | 0.213 | -- | -- | -- | -0.135 | 18.2 | -- | -- | -- | -- |
| 246.77 | 0.732 | 2.82 | -0.0159 | -- | 3.44 | -- | -- | -0.136 | -- | 6.454 | 24 | 23.8 | 0.953 |
| 244.43 | 0.728 | 2.82 | -- | 0.212 | 3.44 | -- | -- | -0.129 | 17.7 | 6.48 | 25 | 23.8 | 0.982 |
| 258.5 | 0.751 | 2.82 | 0.0334 | -- | -- | -- | -- | -0.14 | -- | -- | -- | -- | -- |
| 256.18 | 0.749 | 2.83 | -- | 0.213 | -- | -- | -- | -0.139 | 18.2 | -- | -- | -- | -- |
| 246.77 | 0.732 | 2.82 | -- | -- | 3.43 | -- | -- | -0.134 | -- | 6.461 | 17 | 23.8 | 1.06 |
| 258.53 | 0.75 | 2.82 | -- | -- | -- | -- | -- | -0.143 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 228.13 | wind | 7.0 | 270 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 228.50 | wind | 7.0 | 270 | > th | dose independent | rect. | 20 | 1 |
| 4 | 232.51 | wind | 5.0 | 90 | > th | dose independent | rect. | 21 | 3 |
| 5 | 232.57 | wind | 3.0 | 10 | > th | dose dependent | rect. | 21 | 4 |
| 11 | 233.74 | wind | 3.0 | 10 | > th | dose dependent | rect. | 21 | 7 |
| 23 | 233.92 | wind | 5.0 | 30 | > th | dose independent | rect. | 21 | 9 |
| 29 | 233.97 | wind | 5.0 | 30 | > th | dose independent | rect. | 21 | 7 |
| 33 | 234.06 | wind | 5.0 | 30 | > th | dose independent | rect. | 21 | 5 |
| 56 | 234.45 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 21 | 3 |
| 84 | 235.12 | humidity | 80.0 | 30 | < th | dose independent | rect. | 20 | 5 |
| 86 | 235.13 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 17 | 3 |
| 93 | 235.23 | wind | 5.0 | 270 | > th | dose dependent | rect. | 19 | 5 |
| 105 | 235.87 | radiation | 1.0 | 30 | > th | dose independent | rect. | 18 | 1 |
| 117 | 235.99 | wind | 5.0 | 270 | > th | dose independent | rect. | 19 | 5 |
| 175 | 239.22 | wind | 3.0 | 10 | > th | dose dependent | rect. | 24 | 1 |
| 216 | 240.18 | humidity | 50.0 | 90 | < th | dose independent | sin | 13 | NA |
| 217 | 240.21 | humidity | 50.0 | 90 | < th | dose dependent | sin | 13 | NA |
| 220 | 240.29 | wind | 5.0 | 90 | > th | dose independent | rect. | 23 | 1 |
| 231 | 240.51 | humidity | 50.0 | 90 | > th | dose independent | sin | 13 | NA |
| 244 | 240.82 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 4 |
| 248 | 240.95 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 249 | 240.96 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 17 | 2 |
| 254 | 241.08 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 8 | 12 |
| 257 | 241.14 | humidity | 50.0 | 90 | < th | dose independent | rect. | 14 | 4 |
| 296 | 241.22 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 14 | 4 |
| 468 | 241.97 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 472 | 241.99 | temperature | 25.0 | 720 | < th | dose independent | rect. | 13 | 18 |
| 498 | 242.08 | temperature | 25.0 | 720 | < th | dose independent | rect. | 15 | 16 |
| 574 | 242.39 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 16 |
| 575 | 242.40 | wind | 1.0 | 30 | < th | dose independent | rect. | 15 | 1 |
| 582 | 242.40 | wind | 1.0 | 30 | < th | dose dependent | rect. | 15 | 1 |
| 590 | 242.42 | wind | 1.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 594 | 242.42 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 12 |
| 692 | 242.65 | temperature | 25.0 | 30 | > th | dose independent | rect. | 19 | 1 |
| 756 | 242.89 | wind | 1.0 | 270 | < th | dose dependent | rect. | 8 | 15 |
| 761 | 242.96 | temperature | 25.0 | 720 | > th | dose independent | sin | 16 | NA |
| 784 | 243.14 | wind | 5.0 | 270 | > th | dose independent | rect. | 19 | 11 |
| 806 | 243.25 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 807 | 243.25 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 813 | 243.27 | wind | 7.0 | 1440 | < th | dose independent | rect. | 1 | 8 |
| 825 | 243.38 | temperature | 25.0 | 720 | < th | dose independent | sin | 15 | NA |
| 867 | 243.56 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 17 | 3 |
| 902 | 243.66 | wind | 5.0 | 270 | > th | dose dependent | rect. | 19 | 12 |
| 922 | 243.68 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 12 |
| 939 | 243.76 | temperature | 25.0 | 30 | > th | dose independent | rect. | 17 | 3 |
| 944 | 243.77 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 949 | 243.79 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 23 | 1 |
| 954 | 243.79 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 23 | 1 |
| 967 | 243.87 | atmosphere | 1005.0 | 90 | < th | dose independent | sin | 21 | NA |
| 969 | 243.87 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 11 |
| 974 | 243.88 | temperature | 25.0 | 720 | < th | dose independent | rect. | 15 | 8 |