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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0451400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 1-aminocyclopropane-1-carboxylate oxidase 1 (EC 1.14.17.4) (ACC oxidase 1) (Ethylene-forming enzyme) (EFE).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.47 (0.0825) R2 : 0.357
β1 : -3.59 (0.386) R2dD : 0.244 R2D : 0.125
β2 : 1.07 (0.205) R2dC : 0.0472 R2C : 0.0164
β3 : 0.792 (0.213) R2dE : 0.0324 R2E : 0.0167
β4 : -2.8 (0.763) R2dD*C : 0.0207 R2D*C : 0.00676
β5 : -5.15 (1.08) R2dD*E : 0.067 R2D*E : -0.0944
γ1 : 0.844 (0.21) R2dN8 : 0.0513 R2N8 : 0.13
σ : 1.43
deviance : 929.09
__
_____
C
peak time of C : 9.68
E
wheather : temperature
threshold : 24.8
memory length : 240
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14.1
open length of G : 19

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
929.09 1.43 4.47 -3.59 1.07 0.792 -2.8 -5.15 0.844 9.68 24.8 240 14.1 19
966.12 1.45 4.32 -2.58 0.921 1.12 -2.07 -- 1.21 10.2 26.4 1059 14.2 18.1
954.79 1.44 4.46 -3.6 1.08 0.786 -- -4.41 0.86 9.19 24.77 218 14.3 19.3
977.52 1.46 4.33 -2.55 0.991 0.991 -- -- 1.31 10.4 26.35 985 14.6 18.4
1009.75 1.48 4.4 -3.56 -- 0.596 -- -3.56 1.07 -- 24.4 202 14.5 20.4
988.86 1.47 4.29 -2.21 0.778 -- -2.06 -- 1.55 10.2 -- -- -- --
1003.94 1.48 4.29 -2.3 0.822 -- -- -- 1.54 9.34 -- -- -- --
1020.53 1.49 4.32 -2.57 -- 0.765 -- -- 1.36 -- 27.6 1320 13 19
1138.51 1.57 4.26 -- 0.98 0.606 -- -- 1.72 9.96 26.7 983 15 17.8
1043.35 1.51 4.32 -2.3 -- -- -- -- 1.55 -- -- -- -- --
1143.28 1.58 4.24 -- 0.824 -- -- -- 1.8 9.55 -- -- -- --
1100.78 1.55 4.18 -- -- -1.43 -- -- 2.15 -- 18.4 47520 13.4 20
1183.31 1.61 4.26 -- -- -- -- -- 1.8 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 936.33 temperature 25.0 270 > th dose independent rect. 14 19
2 938.36 atmosphere 995.0 90 > th dose dependent rect. 3 8
3 939.13 temperature 15.0 90 > th dose dependent rect. 3 8
5 939.80 temperature 15.0 10 > th dose independent rect. 12 15
7 940.14 humidity 60.0 270 > th dose independent rect. 10 17
8 940.22 temperature 20.0 30 > th dose independent rect. 6 17
9 940.35 temperature 20.0 270 > th dose independent rect. 4 5
13 940.46 temperature 15.0 90 > th dose independent rect. 12 15
14 940.51 temperature 15.0 90 > th dose independent rect. 3 9
18 940.82 temperature 10.0 10 > th dose dependent rect. 4 8
26 941.68 humidity 60.0 270 > th dose independent rect. 9 8
28 941.95 atmosphere 1005.0 30 > th dose independent rect. 4 7
36 942.96 temperature 15.0 270 > th dose dependent rect. 3 6
52 944.32 temperature 20.0 270 > th dose independent rect. 4 16
57 944.63 humidity 90.0 30 < th dose independent rect. 4 8
59 944.79 humidity 60.0 270 > th dose independent rect. 9 21
60 944.84 wind 7.0 10 < th dose independent rect. 4 8
66 945.17 temperature 20.0 30 > th dose independent rect. 6 6
75 945.53 temperature 20.0 30 > th dose independent rect. 4 19
76 945.58 humidity 50.0 270 > th dose dependent rect. 9 8
80 945.74 temperature 25.0 30 > th dose independent rect. 19 16
81 945.74 humidity 50.0 10 > th dose independent rect. 12 16
89 946.29 temperature 10.0 30 > th dose dependent rect. 6 17
90 946.30 atmosphere 1000.0 10 > th dose independent rect. 3 9
98 946.69 temperature 30.0 30 < th dose independent rect. 12 16
100 946.72 temperature 20.0 90 > th dose dependent rect. 16 19
101 946.73 radiation 40.0 90 < th dose independent rect. 11 16
110 946.95 radiation 1.0 270 < th dose dependent rect. 21 22
117 947.22 temperature 20.0 30 > th dose dependent rect. 19 16
118 947.26 radiation 20.0 90 < th dose dependent rect. 23 17
152 948.16 temperature 25.0 14400 < th dose independent rect. 4 1
155 948.18 temperature 10.0 30 > th dose dependent rect. 4 19
156 948.20 temperature 15.0 10 > th dose dependent rect. 6 6
157 948.22 humidity 60.0 270 > th dose independent rect. 22 16
158 948.23 radiation 1.0 270 < th dose dependent rect. 21 20
159 948.28 humidity 50.0 1440 < th dose dependent rect. 16 1
161 948.30 humidity 50.0 1440 < th dose independent rect. 16 1
166 948.43 temperature 20.0 30 > th dose independent rect. 6 12
168 948.44 humidity 50.0 90 > th dose dependent rect. 11 6
175 948.58 temperature 15.0 30 > th dose independent rect. 23 7
184 948.74 radiation 10.0 10 > th dose independent rect. 15 21
188 948.78 temperature 25.0 14400 > th dose independent rect. 4 1
190 948.85 radiation 1.0 270 < th dose dependent rect. 21 17
191 948.86 wind 9.0 10 < th dose independent rect. 12 16
193 948.87 humidity 50.0 10 > th dose dependent rect. 24 17
199 949.00 radiation 1.0 30 < th dose dependent rect. 4 13
208 949.18 temperature 25.0 270 < th dose independent rect. 12 15
223 949.38 temperature 25.0 270 < th dose independent rect. 11 17
225 949.42 wind 3.0 90 < th dose independent rect. 18 5
228 949.46 radiation 20.0 90 < th dose dependent rect. 23 14
229 949.52 temperature 15.0 270 > th dose independent rect. 21 7
234 949.61 wind 9.0 90 < th dose independent rect. 12 15
257 949.84 atmosphere 1005.0 30 > th dose independent rect. 4 5
282 950.21 humidity 50.0 270 > th dose dependent rect. 11 2
293 950.34 temperature 10.0 270 > th dose dependent rect. 3 19
303 950.44 temperature 20.0 10 > th dose dependent rect. 14 22
320 950.68 wind 9.0 270 < th dose dependent rect. 14 8
346 951.01 humidity 50.0 90 > th dose dependent rect. 11 16
357 951.15 humidity 50.0 10 > th dose dependent rect. 11 6
376 951.38 precipitation 0.1 90 < th dose independent rect. 3 8
377 951.38 precipitation 0.1 90 < th dose dependent rect. 3 8
382 951.47 temperature 25.0 720 > th dose dependent rect. 19 14
383 951.49 atmosphere 995.0 10 > th dose dependent rect. 12 16
385 951.50 temperature 25.0 720 > th dose dependent rect. 21 1
390 951.56 temperature 30.0 43200 < th dose independent rect. 18 13
407 951.69 temperature 25.0 43200 > th dose dependent rect. 5 1
415 951.73 humidity 50.0 90 > th dose independent rect. 3 8
425 951.82 temperature 30.0 43200 < th dose independent rect. 18 11
430 951.83 radiation 1.0 270 < th dose dependent rect. 5 23
436 951.86 atmosphere 1015.0 90 < th dose independent rect. 3 8
444 951.92 temperature 30.0 43200 < th dose independent rect. 18 2
455 952.02 radiation 1.0 270 < th dose independent rect. 21 20
457 952.05 temperature 30.0 10 < th dose independent rect. 4 8
463 952.12 temperature 30.0 43200 > th dose independent rect. 18 1
480 952.15 temperature 25.0 14400 > th dose independent rect. 23 7
482 952.15 temperature 25.0 1440 > th dose dependent rect. 4 4
493 952.20 radiation 1.0 270 < th dose dependent sin 11 NA
495 952.21 atmosphere 1010.0 10 < th dose independent rect. 12 16
496 952.21 radiation 1.0 270 > th dose independent rect. 14 21
511 952.29 humidity 60.0 270 > th dose independent rect. 21 20
523 952.35 temperature 10.0 10 > th dose dependent rect. 6 19
543 952.46 precipitation 0.1 90 < th dose independent rect. 11 16
544 952.46 precipitation 0.1 90 < th dose dependent rect. 11 16
555 952.59 humidity 50.0 4320 > th dose independent rect. 16 1
566 952.69 radiation 1.0 270 < th dose independent rect. 21 17
579 952.77 radiation 1.0 30 > th dose dependent rect. 15 21
584 952.82 atmosphere 1005.0 90 > th dose independent rect. 12 15
607 952.95 temperature 30.0 43200 > th dose dependent rect. 17 2
625 952.99 atmosphere 995.0 90 > th dose independent rect. 11 16
628 953.00 wind 3.0 10 < th dose independent rect. 20 2
645 953.06 wind 7.0 10 < th dose independent rect. 6 6
686 953.23 temperature 10.0 10 > th dose dependent rect. 4 21
696 953.31 radiation 30.0 30 < th dose dependent rect. 1 16
697 953.32 humidity 50.0 4320 > th dose independent rect. 13 4
746 953.48 temperature 25.0 10 > th dose dependent sin 10 NA
753 953.52 precipitation 0.1 10 < th dose independent rect. 4 8
756 953.52 precipitation 0.1 10 < th dose dependent rect. 4 8
771 953.58 temperature 10.0 10 > th dose independent rect. 4 8
774 953.58 atmosphere 1015.0 10 < th dose independent rect. 4 8
790 953.69 radiation 40.0 270 < th dose independent rect. 9 18
797 953.71 precipitation 0.1 10 < th dose independent rect. 12 16
798 953.71 precipitation 0.1 10 < th dose dependent rect. 12 16
813 953.86 temperature 25.0 1440 > th dose dependent rect. 21 12
848 953.97 atmosphere 995.0 10 > th dose independent rect. 12 16
855 954.01 humidity 50.0 10 > th dose independent rect. 24 17
869 954.05 wind 9.0 10 < th dose dependent rect. 4 8
886 954.13 temperature 30.0 10 < th dose dependent rect. 1 16
887 954.13 humidity 50.0 10 > th dose dependent rect. 11 17
890 954.14 wind 3.0 10 < th dose dependent rect. 17 6
957 954.30 temperature 25.0 43200 > th dose dependent rect. 22 1