Os09g0449700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os09g0449700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.49 | 0.555 | 3.13 | -0.374 | 0.577 | 2.28 | -0.468 | -2.07 | 0.0557 | 11.4 | 1.497 | 710 | 11 | 8.13 |
| 140.6 | 0.552 | 3.13 | -0.433 | 0.532 | 2.56 | 0.222 | -- | 0.0112 | 11.1 | 0.71 | 714 | 11.1 | 8.02 |
| 139.76 | 0.551 | 3.13 | -0.418 | 0.575 | 2.31 | -- | -1.4 | 0.0508 | 11.3 | 1.506 | 714 | 11 | 8.13 |
| 140.68 | 0.552 | 3.14 | -0.399 | 0.486 | 2.58 | -- | -- | 0.0137 | 11.3 | 0.7099 | 714 | 11 | 8 |
| 145.39 | 0.562 | 3.16 | -0.32 | -- | 1.9 | -- | -0.625 | 0.0298 | -- | 0.5575 | 742 | 10.8 | 7.83 |
| 179.07 | 0.627 | 3.2 | -0.68 | 0.247 | -- | -0.702 | -- | -0.134 | 23.3 | -- | -- | -- | -- |
| 180.48 | 0.629 | 3.19 | -0.655 | 0.272 | -- | -- | -- | -0.134 | 0.987 | -- | -- | -- | -- |
| 145.49 | 0.562 | 3.15 | -0.369 | -- | 2.06 | -- | -- | 0.0291 | -- | 0.5359 | 734 | 10.6 | 7.9 |
| 144.42 | 0.56 | 3.13 | -- | 0.55 | 2.76 | -- | -- | 0.082 | 11.3 | 0.7003 | 714 | 11 | 8 |
| 185.1 | 0.636 | 3.19 | -0.645 | -- | -- | -- | -- | -0.129 | -- | -- | -- | -- | -- |
| 191.8 | 0.648 | 3.18 | -- | 0.262 | -- | -- | -- | -0.0614 | 0.881 | -- | -- | -- | -- |
| 149.07 | 0.569 | 3.15 | -- | -- | 2.18 | -- | -- | 0.0289 | -- | 0.5384 | 748 | 10.6 | 7.88 |
| 196.07 | 0.654 | 3.17 | -- | -- | -- | -- | -- | -0.0576 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.31 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 8 |
| 3 | 141.63 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 16 |
| 8 | 142.27 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 19 |
| 9 | 142.30 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 8 |
| 14 | 143.04 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 27 | 143.64 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 16 |
| 30 | 143.86 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 6 |
| 99 | 147.26 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 4 |
| 137 | 148.08 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 162 | 148.80 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 166 | 148.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 168 | 148.83 | humidity | 90 | 720 | > th | dose independent | rect. | 12 | 1 |
| 170 | 148.83 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 193 | 149.35 | radiation | 1 | 720 | > th | dose independent | sin | 21 | NA |
| 200 | 149.45 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 201 | 149.46 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 223 | 149.87 | radiation | 1 | 720 | < th | dose independent | sin | 20 | NA |
| 240 | 150.13 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 4 |
| 246 | 150.18 | radiation | 10 | 720 | < th | dose dependent | sin | 17 | NA |
| 270 | 150.46 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 20 |
| 321 | 151.13 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 379 | 151.98 | radiation | 1 | 720 | < th | dose dependent | sin | 21 | NA |
| 516 | 153.82 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 558 | 154.41 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 18 |
| 570 | 154.49 | humidity | 90 | 720 | < th | dose dependent | rect. | 11 | 4 |
| 572 | 154.52 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 9 |
| 574 | 154.56 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 576 | 154.60 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 580 | 154.68 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 4 | 4 |
| 617 | 155.10 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 700 | 155.51 | humidity | 90 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 748 | 155.90 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 749 | 155.90 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 760 | 155.95 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 5 | 3 |
| 766 | 155.99 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 796 | 156.12 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 9 |