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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0447500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.03 (0.0457) R2 : 0.468
β1 : 1.57 (0.179) R2dD : 0.198 R2D : 0.0715
β2 : 1.03 (0.102) R2dC : 0.15 R2C : 0.16
β3 : -1.91 (0.175) R2dE : 0.288 R2E : 0.11
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.38 (0.116) R2dN8 : 0.0256 R2N8 : -0.0713
σ : 0.798
deviance : 293.67
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_____
C
peak time of C : 0.68
E
wheather : radiation
threshold : 1.51
memory length : 26079
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
287.62 0.797 4.22 0.352 1.29 -2.67 0.446 -5.97 -0.0872 0.306 1.05 11518 -- --
332.79 0.85 4.07 1.24 1.49 -2.31 -0.253 -- 0.198 0.358 1.95 8504 -- --
287.92 0.79 4.22 0.394 1.25 -2.69 -- -5.95 -0.073 0.376 1.06 11548 -- --
293.67 0.798 4.03 1.57 1.03 -1.91 -- -- 0.38 0.68 1.51 26079 -- --
349.74 0.871 4.11 0.396 -- -2.7 -- -5.91 0.057 -- 1.2 13276 -- --
408.24 0.947 4.18 1.13 1.21 -- 0.37 -- -0.331 0.15 -- -- -- --
408.81 0.947 4.18 1.12 1.21 -- -- -- -0.333 0.217 -- -- -- --
354.95 0.877 3.97 1.85 -- -2.25 -- -- 0.375 -- 1.588 26291 -- --
376.38 0.904 4.04 -- 1.15 -1.79 -- -- 0.347 0.415 2.442 26077 -- --
500.67 1.05 4.16 1.16 -- -- -- -- -0.314 -- -- -- -- --
441.64 0.983 4.21 -- 1.22 -- -- -- -0.457 0.266 -- -- -- --
440.77 0.981 4.17 -- -- -0.922 -- -- -0.391 -- 2.442 26077 -- --
535.89 1.08 4.18 -- -- -- -- -- -0.443 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 271.47 humidity 90 43200 > th dose dependent rect. 20 1
2 272.02 humidity 80 43200 < th dose independent rect. 14 1
3 272.48 humidity 80 43200 > th dose independent rect. 13 5
4 272.60 humidity 80 43200 > th dose independent rect. 14 1
5 272.60 humidity 80 43200 < th dose independent rect. 14 3
6 272.72 humidity 90 43200 > th dose dependent rect. 20 4
9 272.97 humidity 80 43200 > th dose independent rect. 11 8
24 273.53 humidity 80 43200 < th dose independent rect. 11 7
25 273.53 humidity 90 43200 > th dose dependent rect. 22 1
32 273.75 humidity 80 43200 > th dose dependent rect. 14 11
36 273.81 radiation 1 43200 < th dose dependent rect. 13 10
37 273.82 radiation 1 43200 < th dose dependent rect. 13 7
47 273.87 radiation 1 43200 < th dose dependent rect. 13 14
77 274.04 radiation 1 43200 < th dose dependent sin 18 NA
85 274.12 humidity 80 43200 > th dose dependent sin 17 NA
91 274.17 radiation 1 43200 < th dose dependent rect. 9 14
92 274.18 radiation 1 43200 < th dose dependent rect. 9 11
99 274.23 radiation 1 43200 < th dose dependent rect. 9 18
130 274.30 radiation 1 43200 < th dose independent rect. 7 11
159 274.38 radiation 1 43200 < th dose independent rect. 7 14
188 274.52 humidity 90 43200 < th dose independent rect. 20 5
212 274.66 radiation 1 43200 < th dose dependent rect. 12 19
233 274.70 humidity 70 43200 > th dose dependent rect. 13 2
255 274.76 radiation 1 43200 > th dose independent rect. 7 12
270 274.79 humidity 90 43200 < th dose independent rect. 14 12
295 274.87 radiation 1 43200 < th dose independent sin 21 NA
324 274.93 humidity 90 43200 < th dose independent sin 16 NA
446 275.13 radiation 1 43200 < th dose dependent no NA NA
451 275.13 radiation 1 43200 < th dose dependent rect. 21 22
467 275.16 radiation 1 43200 < th dose independent rect. 12 8
483 275.21 humidity 80 43200 < th dose independent rect. 8 10
495 275.24 radiation 1 43200 < th dose dependent rect. 16 23
496 275.24 radiation 1 43200 < th dose dependent rect. 18 23
530 275.34 radiation 1 43200 > th dose independent sin 21 NA
542 275.36 radiation 1 43200 < th dose independent rect. 12 23
543 275.36 temperature 20 43200 > th dose dependent rect. 17 1
565 275.41 humidity 90 43200 > th dose independent rect. 18 4
568 275.42 radiation 1 43200 < th dose independent rect. 17 1
574 275.44 humidity 90 43200 > th dose independent rect. 17 10
592 275.51 humidity 90 43200 > th dose independent rect. 20 1
602 275.54 humidity 90 43200 > th dose independent rect. 14 12
614 275.55 radiation 1 43200 > th dose independent rect. 12 23
615 275.55 radiation 1 43200 < th dose independent rect. 16 23
638 275.60 radiation 1 43200 < th dose independent rect. 2 18
660 275.61 humidity 90 43200 > th dose independent sin 16 NA
674 275.62 radiation 1 43200 < th dose independent no NA NA
708 275.65 temperature 15 43200 > th dose dependent rect. 4 1
733 275.71 radiation 1 43200 > th dose independent rect. 12 7
744 275.71 temperature 20 43200 > th dose dependent rect. 16 5
770 275.75 radiation 1 43200 > th dose independent rect. 16 23
797 275.82 temperature 25 43200 < th dose independent rect. 16 2
814 275.85 radiation 1 43200 > th dose independent no NA NA
971 276.05 temperature 25 43200 > th dose independent rect. 16 2