Os09g0446400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transposase.
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Os09g0446400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transposase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 166.4 | 0.606 | 2.9 | 0.25 | 0.126 | 0.705 | 0.444 | 1.45 | -0.0906 | 22.1 | 1.9 | 4244 | -- | -- |
| 167.74 | 0.603 | 2.86 | 0.222 | 0.143 | 0.526 | 0.432 | -- | -0.0595 | 22.6 | 2.015 | 4350 | -- | -- |
| 167.13 | 0.602 | 2.9 | 0.219 | 0.113 | 0.705 | -- | 1.53 | -0.0845 | 22.2 | 2 | 4186 | -- | -- |
| 168.29 | 0.604 | 2.86 | 0.184 | 0.139 | 0.502 | -- | -- | -0.0437 | 23.7 | 2.256 | 4361 | -- | -- |
| 167.62 | 0.603 | 2.9 | 0.235 | -- | 0.728 | -- | 1.55 | -0.0855 | -- | 1.653 | 4014 | -- | -- |
| 170.58 | 0.612 | 2.85 | 0.0328 | 0.124 | -- | 0.374 | -- | 0.00254 | 22.6 | -- | -- | -- | -- |
| 171.02 | 0.612 | 2.85 | 0.0158 | 0.129 | -- | -- | -- | 0.000155 | 0.0987 | -- | -- | -- | -- |
| 169.14 | 0.606 | 2.86 | 0.162 | -- | 0.522 | -- | -- | -0.0471 | -- | 1.701 | 3976 | -- | -- |
| 168.94 | 0.605 | 2.86 | -- | 0.13 | 0.406 | -- | -- | -0.0336 | 23.8 | 2.42 | 4341 | -- | -- |
| 172.07 | 0.613 | 2.85 | 0.0199 | -- | -- | -- | -- | 0.00202 | -- | -- | -- | -- | -- |
| 171.03 | 0.612 | 2.85 | -- | 0.129 | -- | -- | -- | -0.00161 | 0.106 | -- | -- | -- | -- |
| 169.75 | 0.607 | 2.86 | -- | -- | 0.427 | -- | -- | -0.0434 | -- | 1.8 | 3963 | -- | -- |
| 172.08 | 0.612 | 2.85 | -- | -- | -- | -- | -- | -0.00019 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 151.42 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 8 | 151.42 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 97 | 163.24 | wind | 1.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 99 | 163.54 | wind | 1.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 105 | 163.87 | wind | 3.0 | 10 | > th | dose independent | rect. | 2 | 3 |
| 114 | 164.11 | wind | 3.0 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 118 | 164.16 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 13 | 23 |
| 119 | 164.16 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 122 | 164.23 | humidity | 90.0 | 10 | < th | dose independent | rect. | 18 | 6 |
| 139 | 164.50 | wind | 3.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 141 | 164.50 | wind | 3.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 151 | 164.78 | wind | 1.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 158 | 164.89 | wind | 1.0 | 30 | > th | dose dependent | rect. | 18 | 10 |
| 159 | 164.90 | wind | 5.0 | 720 | > th | dose independent | rect. | 12 | 1 |
| 161 | 164.91 | wind | 5.0 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 163 | 164.92 | wind | 3.0 | 30 | > th | dose dependent | rect. | 2 | 3 |
| 165 | 164.95 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 21 | 21 |
| 177 | 165.05 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 185 | 165.10 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 208 | 165.18 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 18 | 6 |
| 209 | 165.21 | wind | 3.0 | 270 | > th | dose independent | rect. | 18 | 5 |
| 211 | 165.22 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 21 | 7 |
| 213 | 165.22 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 1 | 15 |
| 215 | 165.24 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 219 | 165.25 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 21 | 17 |
| 232 | 165.27 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 12 | 2 |
| 235 | 165.29 | wind | 3.0 | 90 | < th | dose independent | rect. | 15 | 14 |
| 236 | 165.29 | wind | 1.0 | 30 | > th | dose dependent | rect. | 21 | 7 |
| 237 | 165.30 | wind | 3.0 | 30 | > th | dose independent | rect. | 18 | 11 |
| 238 | 165.30 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 21 | 11 |
| 263 | 165.38 | wind | 3.0 | 30 | > th | dose independent | rect. | 21 | 8 |
| 280 | 165.39 | wind | 1.0 | 30 | > th | dose dependent | rect. | 18 | 15 |
| 316 | 165.51 | wind | 3.0 | 4320 | > th | dose dependent | sin | 3 | NA |
| 317 | 165.51 | humidity | 60.0 | 270 | < th | dose dependent | rect. | 18 | 1 |
| 320 | 165.51 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 15 |
| 325 | 165.52 | humidity | 90.0 | 30 | < th | dose independent | rect. | 21 | 3 |
| 330 | 165.54 | wind | 3.0 | 270 | > th | dose independent | rect. | 17 | 11 |
| 337 | 165.57 | wind | 1.0 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 344 | 165.60 | wind | 5.0 | 4320 | < th | dose independent | rect. | 12 | 2 |
| 349 | 165.60 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 2 |
| 351 | 165.61 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 1 |
| 367 | 165.61 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 21 | 7 |
| 377 | 165.62 | precipitation | 0.1 | 30 | < th | dose independent | sin | 3 | NA |
| 380 | 165.62 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 15 |
| 384 | 165.62 | precipitation | 0.1 | 30 | < th | dose dependent | sin | 3 | NA |
| 387 | 165.63 | wind | 5.0 | 4320 | > th | dose independent | rect. | 12 | 2 |
| 401 | 165.67 | radiation | 1.0 | 10 | > th | dose independent | rect. | 18 | 1 |
| 417 | 165.68 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 21 | 17 |
| 429 | 165.70 | wind | 1.0 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 438 | 165.71 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 21 | 11 |
| 470 | 165.76 | humidity | 60.0 | 270 | < th | dose independent | rect. | 18 | 1 |
| 473 | 165.76 | wind | 9.0 | 270 | < th | dose dependent | rect. | 13 | 13 |
| 478 | 165.77 | temperature | 30.0 | 270 | > th | dose independent | rect. | 18 | 15 |
| 511 | 165.84 | wind | 7.0 | 270 | > th | dose dependent | rect. | 19 | 1 |
| 536 | 165.87 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 11 |
| 549 | 165.88 | precipitation | 0.1 | 30 | > th | dose independent | sin | 3 | NA |
| 570 | 165.91 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 5 |
| 595 | 165.92 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 21 | 1 |
| 600 | 165.92 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 11 |
| 615 | 165.93 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 630 | 165.95 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 5 |
| 680 | 165.99 | precipitation | 0.1 | 30 | > th | dose dependent | sin | 3 | NA |
| 694 | 166.01 | wind | 3.0 | 270 | > th | dose independent | sin | 14 | NA |
| 697 | 166.01 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 12 | 2 |
| 742 | 166.05 | wind | 1.0 | 30 | > th | dose dependent | rect. | 21 | 12 |
| 751 | 166.06 | wind | 3.0 | 30 | > th | dose independent | rect. | 18 | 15 |
| 760 | 166.06 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 3 | 13 |
| 790 | 166.10 | wind | 3.0 | 270 | < th | dose independent | sin | 14 | NA |
| 821 | 166.11 | radiation | 1.0 | 90 | < th | dose independent | rect. | 8 | 3 |
| 823 | 166.11 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 19 | 23 |
| 826 | 166.11 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 8 | 3 |
| 831 | 166.11 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 872 | 166.14 | humidity | 90.0 | 30 | < th | dose independent | rect. | 23 | 1 |
| 965 | 166.21 | wind | 3.0 | 270 | > th | dose dependent | rect. | 19 | 2 |
| 972 | 166.22 | wind | 1.0 | 30 | > th | dose dependent | sin | 11 | NA |
| 973 | 166.22 | wind | 9.0 | 4320 | < th | dose dependent | sin | 2 | NA |
| 976 | 166.22 | wind | 3.0 | 90 | < th | dose dependent | rect. | 21 | 8 |