Os09g0446000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0446000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.54 | 0.255 | 9.25 | 2.1 | 0.349 | -0.409 | -0.404 | 2.33 | 0.154 | 18.5 | 25.56 | 1603 | -- | -- |
| 30.43 | 0.257 | 9.3 | 1.55 | 0.305 | -0.234 | -0.417 | -- | 0.0999 | 18.6 | 25.6 | 8784 | -- | -- |
| 29.94 | 0.255 | 9.25 | 2.1 | 0.347 | -0.406 | -- | 2.31 | 0.15 | 18.4 | 25.65 | 1593 | -- | -- |
| 30.76 | 0.258 | 9.3 | 1.55 | 0.323 | -0.221 | -- | -- | 0.0804 | 18.5 | 25.42 | 8842 | -- | -- |
| 35.74 | 0.278 | 9.24 | 2.12 | -- | -0.393 | -- | 2.19 | 0.15 | -- | 25.88 | 1425 | -- | -- |
| 32.22 | 0.266 | 9.32 | 1.46 | 0.324 | -- | -0.368 | -- | -0.00408 | 18.5 | -- | -- | -- | -- |
| 32.55 | 0.267 | 9.32 | 1.46 | 0.323 | -- | -- | -- | -0.00499 | 18.4 | -- | -- | -- | -- |
| 35.94 | 0.279 | 9.3 | 1.55 | -- | -0.22 | -- | -- | 0.0728 | -- | 25.4 | 8607 | -- | -- |
| 50.66 | 0.332 | 9.43 | -- | 0.324 | 0.995 | -- | -- | -0.467 | 18.2 | 10.43 | 47520 | -- | -- |
| 37.99 | 0.288 | 9.32 | 1.45 | -- | -- | -- | -- | -0.0118 | -- | -- | -- | -- | -- |
| 88.92 | 0.441 | 9.36 | -- | 0.305 | -- | -- | -- | -0.168 | 18.7 | -- | -- | -- | -- |
| 56.07 | 0.349 | 9.42 | -- | -- | 0.987 | -- | -- | -0.469 | -- | 7.198 | 47520 | -- | -- |
| 93.76 | 0.452 | 9.35 | -- | -- | -- | -- | -- | -0.173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.14 | radiation | 10 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 2 | 28.16 | humidity | 80 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 5 | 28.18 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 10 | 28.20 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 57 | 28.27 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 58 | 28.27 | radiation | 40 | 43200 | > th | dose dependent | sin | 10 | NA |
| 62 | 28.28 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 84 | 28.29 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 19 |
| 113 | 28.32 | radiation | 20 | 43200 | < th | dose independent | sin | 11 | NA |
| 116 | 28.32 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 146 | 28.35 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 12 |
| 148 | 28.36 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 151 | 28.36 | humidity | 80 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 158 | 28.37 | radiation | 10 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 177 | 28.38 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 22 |
| 195 | 28.40 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 235 | 28.41 | radiation | 40 | 43200 | < th | dose independent | sin | 9 | NA |
| 236 | 28.41 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 237 | 28.41 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 238 | 28.41 | radiation | 40 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 339 | 28.43 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 357 | 28.43 | radiation | 40 | 43200 | > th | dose dependent | no | NA | NA |
| 504 | 28.44 | radiation | 20 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 511 | 28.44 | temperature | 15 | 270 | > th | dose independent | rect. | 14 | 10 |
| 513 | 28.44 | radiation | 20 | 43200 | < th | dose independent | rect. | 14 | 14 |
| 516 | 28.44 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 556 | 28.45 | radiation | 40 | 43200 | < th | dose independent | sin | 4 | NA |
| 617 | 28.46 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 641 | 28.47 | radiation | 40 | 43200 | < th | dose independent | sin | 1 | NA |
| 643 | 28.47 | radiation | 40 | 43200 | < th | dose independent | no | NA | NA |
| 644 | 28.47 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 650 | 28.47 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 837 | 28.48 | radiation | 40 | 43200 | < th | dose independent | sin | 23 | NA |
| 841 | 28.48 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 870 | 28.48 | radiation | 20 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 893 | 28.49 | radiation | 40 | 43200 | < th | dose independent | sin | 20 | NA |
| 981 | 28.50 | radiation | 40 | 43200 | < th | dose independent | sin | 16 | NA |
| 985 | 28.50 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 994 | 28.50 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 6 |