Os09g0444600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os09g0444600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.97 | 0.589 | 6.56 | -0.116 | 1.05 | -3.21 | 0.456 | -3.44 | -0.109 | 6.47 | 25.13 | 614 | -- | -- |
| 171.14 | 0.609 | 6.59 | -0.621 | 1.17 | -2.8 | 0.408 | -- | -0.166 | 6.57 | 27.34 | 690 | -- | -- |
| 157.43 | 0.584 | 6.57 | -0.142 | 1.05 | -3.2 | -- | -3.26 | -0.116 | 6.43 | 25.1 | 610 | -- | -- |
| 168.87 | 0.605 | 6.63 | -0.758 | 1.15 | -2.97 | -- | -- | -0.271 | 6.83 | 27 | 690 | -- | -- |
| 189.65 | 0.641 | 6.59 | -0.161 | -- | -3.24 | -- | -3.37 | -0.125 | -- | 25.69 | 1254 | -- | -- |
| 298.45 | 0.81 | 6.51 | 0.0892 | 0.754 | -- | -0.186 | -- | 0.379 | 5.04 | -- | -- | -- | -- |
| 298.54 | 0.809 | 6.51 | 0.0894 | 0.753 | -- | -- | -- | 0.38 | 5.03 | -- | -- | -- | -- |
| 196.57 | 0.653 | 6.65 | -0.77 | -- | -2.84 | -- | -- | -0.196 | -- | 30.69 | 1290 | -- | -- |
| 181.75 | 0.628 | 6.61 | -- | 1.15 | -2.67 | -- | -- | -0.13 | 6.54 | 26.95 | 657 | -- | -- |
| 328.33 | 0.847 | 6.51 | 0.117 | -- | -- | -- | -- | 0.399 | -- | -- | -- | -- | -- |
| 298.75 | 0.809 | 6.51 | -- | 0.755 | -- | -- | -- | 0.37 | 5.02 | -- | -- | -- | -- |
| 209.79 | 0.675 | 6.6 | -- | -- | -2.47 | -- | -- | 0.0227 | -- | 34.4 | 1271 | -- | -- |
| 328.69 | 0.846 | 6.52 | -- | -- | -- | -- | -- | 0.387 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 20 |
| 22 | 155.46 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 24 | 155.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 16 |
| 48 | 156.77 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 53 | 156.93 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 56 | 156.97 | temperature | 25 | 720 | < th | dose dependent | sin | 14 | NA |
| 59 | 157.01 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 64 | 157.28 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 80 | 157.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 85 | 157.81 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 129 | 159.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 134 | 159.53 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 144 | 159.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 210 | 162.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 241 | 163.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 5 |
| 256 | 163.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 8 |