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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0443800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.34 (0.0676) R2 : 0.353
β1 : -0.0275 (0.279) R2dD : 3.39e-05 R2D : -0.014
β2 : 0.534 (0.16) R2dC : 0.0178 R2C : -0.0209
β3 : 2.52 (0.261) R2dE : 0.215 R2E : 0.258
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.08 (1.82) R2dD*E : 0.0517 R2D*E : 0.144
γ1 : 0.464 (0.143) R2dN8 : 0.0203 R2N8 : -0.00911
σ : 1.23
deviance : 701.06
__
_____
C
peak time of C : 12.1
E
wheather : humidity
threshold : 69.65
memory length : 872
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19.1
open length of G : 2.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
689.56 1.23 4.35 -0.0384 0.547 2.57 -1.7 7.21 0.463 12.6 69.57 875 19.1 1.41
711.4 1.24 4.4 -0.621 0.626 3.16 -1.96 -- 0.498 12.4 70.2 869 19.1 2.54
701.06 1.23 4.34 -0.0275 0.534 2.52 -- 8.08 0.464 12.1 69.65 872 19.1 2.03
723.42 1.25 4.4 -0.685 0.658 3.22 -- -- 0.495 11.9 70.27 868 19.2 3.72
718.69 1.25 4.36 -0.0149 -- 2.34 -- 8.38 0.427 -- 69.44 883 19.2 2.54
1023.9 1.5 4.49 -0.359 0.626 -- 3.44 -- 0.101 4.52 -- -- -- --
1043.87 1.51 4.48 -0.376 0.81 -- -- -- 0.0841 6.72 -- -- -- --
746.07 1.27 4.42 -0.685 -- 3.04 -- -- 0.459 -- 70.35 876 19.2 4.76
735.82 1.26 4.39 -- 0.631 3.14 -- -- 0.553 11.9 70.13 868 19.2 3.74
1078.17 1.53 4.5 -0.358 -- -- -- -- 0.1 -- -- -- -- --
1047.6 1.51 4.47 -- 0.806 -- -- -- 0.126 6.74 -- -- -- --
757.12 1.28 4.4 -- -- 3 -- -- 0.527 -- 70.13 876 19.2 5.57
1081.54 1.54 4.49 -- -- -- -- -- 0.14 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 713.81 humidity 70 720 < th dose independent rect. 19 1
12 713.87 radiation 20 1440 < th dose dependent rect. 18 10
16 720.32 humidity 70 720 < th dose dependent rect. 19 1
32 726.21 radiation 20 1440 < th dose dependent rect. 18 7
34 729.20 temperature 25 720 > th dose dependent rect. 19 4
38 731.42 radiation 20 1440 < th dose dependent rect. 18 2
44 734.23 radiation 30 4320 > th dose independent rect. 16 16
51 736.09 radiation 30 4320 > th dose independent rect. 7 1
68 736.58 radiation 30 14400 > th dose independent rect. 16 1
84 736.61 radiation 30 14400 > th dose dependent rect. 16 1
113 740.59 temperature 30 1440 < th dose independent sin 11 NA
115 742.98 temperature 30 1440 < th dose independent rect. 15 21
131 743.90 temperature 25 14400 > th dose dependent rect. 4 1
132 743.94 radiation 40 14400 > th dose dependent rect. 15 17
137 745.15 temperature 30 1440 > th dose dependent rect. 14 22
139 745.78 radiation 1 1440 < th dose independent rect. 18 10
144 746.38 temperature 30 1440 > th dose dependent rect. 17 23
145 746.40 radiation 1 1440 < th dose independent rect. 18 12
154 747.30 radiation 1 1440 < th dose independent rect. 18 7
155 747.47 temperature 30 1440 > th dose dependent sin 19 NA
156 747.47 temperature 30 1440 > th dose dependent rect. 9 10
191 747.79 temperature 30 1440 > th dose dependent no NA NA
302 748.08 radiation 1 1440 > th dose independent rect. 18 12
311 748.32 radiation 40 1440 < th dose dependent rect. 17 13
312 748.36 temperature 30 1440 > th dose independent rect. 15 21
327 748.53 temperature 30 1440 > th dose dependent rect. 15 1
329 748.55 radiation 1 1440 < th dose independent rect. 18 2
334 748.61 temperature 30 1440 > th dose dependent rect. 14 5
451 750.43 radiation 30 4320 < th dose independent rect. 7 1
461 751.32 temperature 30 1440 > th dose independent sin 11 NA
471 752.14 temperature 25 720 > th dose dependent rect. 18 14
472 752.15 radiation 1 1440 > th dose independent rect. 18 1
505 753.06 radiation 30 4320 < th dose independent rect. 18 14
528 754.38 humidity 70 1440 > th dose independent rect. 19 9
529 754.57 humidity 70 1440 > th dose independent rect. 19 6
542 755.18 humidity 70 1440 > th dose independent rect. 19 2
560 756.51 radiation 30 4320 < th dose independent rect. 22 10
596 757.31 temperature 30 1440 < th dose independent rect. 15 14
604 757.77 temperature 30 1440 < th dose independent rect. 15 9
621 758.40 temperature 30 1440 < th dose independent rect. 9 20
622 758.43 temperature 30 1440 < th dose independent rect. 9 23
627 758.66 radiation 30 4320 < th dose independent rect. 2 6
628 758.70 temperature 30 1440 < th dose independent rect. 9 15
638 759.12 radiation 1 1440 > th dose dependent rect. 17 13
646 759.35 wind 5 43200 > th dose dependent rect. 12 2
647 759.52 temperature 30 1440 < th dose independent rect. 2 22
649 759.56 temperature 30 1440 < th dose independent rect. 6 23
655 759.61 temperature 30 1440 < th dose independent no NA NA
664 759.67 temperature 30 1440 < th dose independent rect. 22 23
666 759.70 temperature 30 1440 < th dose independent rect. 20 23
685 759.86 temperature 30 1440 < th dose independent rect. 6 18
694 759.90 temperature 25 14400 > th dose independent rect. 4 1
699 759.92 temperature 30 1440 > th dose independent rect. 15 4
731 760.04 wind 7 43200 < th dose independent rect. 3 12
748 760.17 temperature 30 1440 < th dose independent rect. 18 23
773 760.92 wind 7 43200 > th dose independent rect. 3 12
774 760.97 temperature 30 1440 > th dose independent rect. 9 10
796 761.31 wind 7 43200 < th dose independent rect. 10 4
798 761.38 temperature 30 1440 < th dose independent rect. 11 23
843 762.26 wind 7 43200 > th dose independent rect. 10 4
851 762.61 wind 7 43200 < th dose independent rect. 12 1
864 762.87 wind 7 43200 > th dose dependent rect. 15 1
867 762.92 temperature 30 1440 > th dose independent no NA NA