Os09g0442900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Axi 1 (Auxin-independent growth promoter)-like protein.
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Os09g0442900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Axi 1 (Auxin-independent growth promoter)-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.28 | 0.327 | 10.9 | -0.0546 | 0.309 | 0.465 | 0.594 | -0.941 | 0.0731 | 19.7 | 20 | 722 | -- | -- |
| 50.47 | 0.331 | 10.9 | 0.0407 | 0.345 | 0.697 | 0.263 | -- | 0.0753 | 19.5 | 19.5 | 1140 | -- | -- |
| 50.11 | 0.33 | 10.9 | -0.0432 | 0.319 | 0.528 | -- | -0.73 | 0.0771 | 19.3 | 19.76 | 823 | -- | -- |
| 49.53 | 0.328 | 10.9 | -0.0669 | 0.349 | 0.792 | -- | -- | 0.0776 | 19.5 | 19.02 | 2160 | -- | -- |
| 54.98 | 0.345 | 10.9 | -0.0307 | -- | 0.614 | -- | -0.618 | 0.0791 | -- | 19.7 | 650 | -- | -- |
| 60.27 | 0.364 | 10.9 | 0.307 | 0.364 | -- | 0.334 | -- | 0.224 | 19.9 | -- | -- | -- | -- |
| 60.6 | 0.365 | 10.9 | 0.298 | 0.364 | -- | -- | -- | 0.224 | 20 | -- | -- | -- | -- |
| 55.61 | 0.347 | 10.9 | -0.0858 | -- | 0.849 | -- | -- | 0.0557 | -- | 19.03 | 2134 | -- | -- |
| 49.59 | 0.328 | 10.9 | -- | 0.339 | 0.78 | -- | -- | 0.0795 | 19.6 | 19.01 | 2157 | -- | -- |
| 67.82 | 0.385 | 10.9 | 0.295 | -- | -- | -- | -- | 0.219 | -- | -- | -- | -- | -- |
| 62.94 | 0.371 | 10.9 | -- | 0.362 | -- | -- | -- | 0.191 | 20 | -- | -- | -- | -- |
| 55.76 | 0.348 | 10.9 | -- | -- | 0.807 | -- | -- | 0.0673 | -- | 19.1 | 2129 | -- | -- |
| 70.11 | 0.391 | 10.9 | -- | -- | -- | -- | -- | 0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.73 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 3 | 48.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 5 | 48.95 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 22 |
| 10 | 49.06 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 22 |
| 19 | 49.13 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 23 | 49.17 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 29 | 49.24 | temperature | 20 | 720 | < th | dose independent | rect. | 15 | 22 |
| 30 | 49.24 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 23 |
| 32 | 49.24 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 23 |
| 35 | 49.25 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 23 |
| 39 | 49.26 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 45 | 49.28 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 52 | 49.29 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 70 | 49.33 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 81 | 49.36 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 97 | 49.41 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 129 | 49.56 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 133 | 49.58 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 137 | 49.59 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 138 | 49.59 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 141 | 49.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 152 | 49.63 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 157 | 49.64 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 158 | 49.64 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 159 | 49.64 | radiation | 30 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 178 | 49.71 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 16 |
| 218 | 49.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 222 | 49.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 236 | 49.86 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 237 | 49.86 | temperature | 20 | 720 | < th | dose independent | sin | 11 | NA |
| 252 | 49.92 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 269 | 49.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 282 | 50.04 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 284 | 50.04 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 288 | 50.05 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 292 | 50.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 3 |
| 352 | 50.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 355 | 50.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 374 | 50.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 384 | 50.29 | temperature | 20 | 1440 | < th | dose dependent | sin | 8 | NA |
| 389 | 50.31 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 391 | 50.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 6 |
| 397 | 50.32 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 444 | 50.36 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 499 | 50.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 10 |
| 512 | 50.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 7 |
| 571 | 50.49 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 589 | 50.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 10 |
| 633 | 50.54 | humidity | 90 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 808 | 50.67 | wind | 5 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 864 | 50.73 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 877 | 50.74 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 888 | 50.75 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 997 | 50.86 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 1 |