Os09g0442800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0442800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.29 | 0.421 | 8.91 | -3.46 | 0.451 | 0.871 | 0.271 | 0.385 | -0.74 | 13.4 | 25.3 | 1444 | -- | -- |
| 80.35 | 0.417 | 8.92 | -3.56 | 0.445 | 0.895 | 0.268 | -- | -0.749 | 13.4 | 25.52 | 1444 | -- | -- |
| 80.58 | 0.418 | 8.91 | -3.47 | 0.445 | 0.871 | -- | 0.334 | -0.741 | 13.4 | 25.3 | 1458 | -- | -- |
| 80.62 | 0.418 | 8.92 | -3.56 | 0.444 | 0.902 | -- | -- | -0.76 | 13.4 | 25.39 | 1457 | -- | -- |
| 90.52 | 0.443 | 8.92 | -3.46 | -- | 0.954 | -- | 0.346 | -0.745 | -- | 25.27 | 1654 | -- | -- |
| 116.77 | 0.507 | 8.9 | -3.24 | 0.371 | -- | 0.12 | -- | -0.663 | 13.2 | -- | -- | -- | -- |
| 116.83 | 0.506 | 8.9 | -3.24 | 0.371 | -- | -- | -- | -0.663 | 13.2 | -- | -- | -- | -- |
| 90.51 | 0.443 | 8.93 | -3.57 | -- | 0.996 | -- | -- | -0.775 | -- | 25.2 | 1656 | -- | -- |
| 388.14 | 0.918 | 8.81 | -- | 0.424 | 0.371 | -- | -- | -0.257 | 12.9 | 32.1 | 1564 | -- | -- |
| 125.32 | 0.523 | 8.91 | -3.25 | -- | -- | -- | -- | -0.67 | -- | -- | -- | -- | -- |
| 392.89 | 0.927 | 8.82 | -- | 0.427 | -- | -- | -- | -0.302 | 13.5 | -- | -- | -- | -- |
| 268.2 | 0.763 | 8.69 | -- | -- | -1.9 | -- | -- | 0.266 | -- | 12.16 | 47520 | -- | -- |
| 404.06 | 0.938 | 8.82 | -- | -- | -- | -- | -- | -0.31 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.44 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 16 | 14 |
| 3 | 77.48 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 4 | 77.54 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 15 | 14 |
| 5 | 77.55 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 15 | 77.56 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 14 |
| 55 | 77.95 | radiation | 10.0 | 14400 | < th | dose dependent | sin | 16 | NA |
| 70 | 78.00 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 16 | 13 |
| 71 | 78.01 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 16 | 3 |
| 104 | 78.05 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 121 | 78.19 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 135 | 78.26 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 148 | 78.28 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 164 | 78.37 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 221 | 78.52 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 222 | 78.52 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 232 | 78.55 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 248 | 78.56 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 260 | 78.60 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 14 |
| 335 | 78.84 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 351 | 78.86 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 16 | 14 |
| 416 | 78.94 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 19 | NA |
| 456 | 79.05 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 465 | 79.09 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 477 | 79.09 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 15 | 3 |
| 482 | 79.11 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 18 |
| 485 | 79.12 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 486 | 79.13 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 487 | 79.13 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 489 | 79.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 566 | 79.28 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 613 | 79.41 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 642 | 79.48 | radiation | 10.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 643 | 79.48 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 16 | 3 |
| 681 | 79.60 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 686 | 79.61 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 687 | 79.62 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 704 | 79.64 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 705 | 79.64 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 12 |
| 771 | 79.76 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 772 | 79.76 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 781 | 79.78 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 791 | 79.80 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 799 | 79.83 | temperature | 30.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 809 | 79.84 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 22 |
| 846 | 79.89 | temperature | 30.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 847 | 79.89 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 13 |
| 860 | 79.91 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 892 | 79.94 | temperature | 30.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 925 | 80.00 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 21 | NA |
| 957 | 80.02 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 3 |