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Os09g0442300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Oryzain gamma chain precursor (EC 3.4.22.-).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0277) R2 : 0.94
β1 : 3.12 (0.101) R2dD : 0.131 R2D : 0.0975
β2 : 4.31 (0.0854) R2dC : 0.504 R2C : 0.736
β3 : -2.43 (0.115) R2dE : 0.0913 R2E : 0.324
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.418 (0.0596) R2dN8 : 0.0085 R2N8 : -0.0141
σ : 0.517
deviance : 123.12
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_____
C
peak time of C : 15.6
E
wheather : temperature
threshold : 14.15
memory length : 196
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.38
open length of G : 3.92

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
123.61 0.522 11.6 3.1 4.27 -2.51 -0.584 -0.569 0.423 15.6 14.5 228 2.06 4.1
122.93 0.516 11.6 3.13 4.32 -2.43 -0.427 -- 0.415 15.6 13.66 209 2.25 3.97
123.5 0.518 11.6 3.13 4.29 -2.41 -- -0.0802 0.42 15.6 13.83 205 2.25 4.03
123.12 0.517 11.6 3.12 4.31 -2.43 -- -- 0.418 15.6 14.15 196 2.38 3.92
723.25 1.25 11.5 3.06 -- -4.12 -- -0.863 0.511 -- -4.191 57 2.26 5.33
215.85 0.689 11.7 2.99 5.47 -- 0.0341 -- 0.24 16.1 -- -- -- --
215.85 0.688 11.7 2.99 5.47 -- -- -- 0.24 16.1 -- -- -- --
557.84 1.1 11.4 3.63 -- -4.68 -- -- 0.779 -- -1.971 178 0.0165 7.2
377.18 0.905 11.7 -- 4.47 -2.05 -- -- 0.0539 15.7 12.77 166 2.9 3.57
1843.96 2.01 11.6 2.77 -- -- -- -- 0.0944 -- -- -- -- --
452.07 0.995 11.7 -- 5.41 -- -- -- -0.0932 16.1 -- -- -- --
812.5 1.33 11.6 -- -- -4.34 -- -- 0.366 -- -0.3932 167 0.0165 7.37
2046.56 2.11 11.7 -- -- -- -- -- -0.213 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 126.25 temperature 15.0 270 > th dose dependent rect. 2 4
9 129.92 temperature 20.0 90 > th dose independent rect. 3 4
15 133.05 humidity 60.0 270 > th dose dependent rect. 2 3
19 133.85 wind 7.0 90 < th dose dependent rect. 3 4
30 135.41 precipitation 0.1 270 < th dose independent rect. 5 21
31 135.41 precipitation 0.1 270 < th dose dependent rect. 5 21
34 135.75 precipitation 0.1 90 < th dose independent rect. 3 4
35 135.75 precipitation 0.1 90 < th dose dependent rect. 3 4
38 136.14 radiation 10.0 270 < th dose independent rect. 2 4
39 136.14 wind 9.0 270 < th dose independent rect. 5 22
41 136.22 radiation 1.0 270 < th dose independent rect. 3 2
43 136.24 radiation 10.0 270 < th dose dependent rect. 3 2
44 136.27 precipitation 0.1 270 < th dose independent rect. 3 2
45 136.27 precipitation 0.1 270 < th dose dependent rect. 3 2
49 136.41 wind 9.0 90 < th dose independent rect. 7 20
56 136.52 wind 9.0 270 < th dose independent rect. 3 2
57 136.52 temperature 10.0 270 > th dose independent rect. 3 2
59 136.52 temperature 30.0 270 < th dose independent rect. 3 2
60 136.52 humidity 50.0 270 > th dose independent rect. 3 2
63 136.52 atmosphere 995.0 270 > th dose independent rect. 3 2
64 136.52 atmosphere 1010.0 270 < th dose independent rect. 3 2
69 136.52 temperature 10.0 270 > th dose independent rect. 5 22
96 136.70 temperature 10.0 90 > th dose independent rect. 7 20
102 136.77 humidity 90.0 270 > th dose independent rect. 2 3
123 137.64 wind 9.0 270 < th dose dependent rect. 3 2
152 138.70 temperature 10.0 720 > th dose dependent rect. 18 4
176 140.60 radiation 40.0 270 < th dose dependent rect. 15 15
178 140.63 temperature 15.0 10 > th dose dependent rect. 3 4
197 141.28 atmosphere 1015.0 90 < th dose dependent rect. 3 4
204 141.49 temperature 30.0 270 < th dose dependent rect. 21 4
219 141.57 humidity 50.0 10 > th dose dependent rect. 4 4
222 141.64 atmosphere 995.0 90 > th dose independent rect. 7 20
227 141.76 radiation 1.0 270 < th dose dependent rect. 2 17
243 142.12 temperature 30.0 270 < th dose dependent rect. 23 1
245 142.24 radiation 10.0 10 < th dose independent rect. 4 4
258 142.73 temperature 30.0 90 < th dose dependent rect. 23 4
261 142.78 temperature 30.0 10 < th dose dependent rect. 23 5
269 143.13 temperature 15.0 270 > th dose independent rect. 11 10
277 143.28 atmosphere 1015.0 270 < th dose independent rect. 10 11
296 143.45 radiation 1.0 270 < th dose independent rect. 2 17
356 144.49 radiation 1.0 270 < th dose dependent rect. 2 15
362 144.66 temperature 20.0 10 > th dose independent rect. 3 5
384 144.99 radiation 40.0 10 < th dose dependent rect. 4 4
397 145.25 humidity 70.0 10 > th dose independent rect. 4 4
410 145.54 atmosphere 995.0 270 > th dose dependent rect. 23 1
435 146.17 wind 9.0 10 < th dose independent rect. 8 20
437 146.21 radiation 1.0 270 < th dose independent rect. 1 19
440 146.25 atmosphere 995.0 10 > th dose dependent rect. 23 5
444 146.35 temperature 15.0 270 > th dose independent rect. 24 23
446 146.44 radiation 1.0 270 < th dose dependent rect. 1 19
474 146.59 wind 9.0 10 < th dose independent rect. 4 4
475 146.59 temperature 10.0 10 > th dose independent rect. 4 4
477 146.59 temperature 30.0 10 < th dose independent rect. 4 4
478 146.59 humidity 50.0 10 > th dose independent rect. 4 4
480 146.59 atmosphere 995.0 10 > th dose independent rect. 4 4
481 146.59 atmosphere 1015.0 10 < th dose independent rect. 4 4
482 146.59 temperature 10.0 10 > th dose independent rect. 8 20
484 146.61 radiation 20.0 270 < th dose independent rect. 16 14
487 146.63 precipitation 0.1 10 < th dose independent rect. 4 4
488 146.63 precipitation 0.1 10 < th dose dependent rect. 4 4
502 146.78 temperature 10.0 270 > th dose independent rect. 21 13
503 146.78 atmosphere 995.0 270 > th dose independent rect. 21 13
507 146.80 wind 9.0 270 < th dose independent rect. 21 13
536 147.00 humidity 50.0 270 > th dose independent rect. 21 13
581 147.61 temperature 15.0 270 > th dose independent rect. 1 20
638 148.61 atmosphere 1015.0 270 < th dose independent rect. 1 20
646 148.74 temperature 15.0 270 > th dose independent rect. 16 14
647 148.74 atmosphere 1010.0 270 < th dose independent rect. 15 15
657 148.84 temperature 10.0 270 > th dose dependent rect. 17 13
658 148.89 wind 9.0 270 < th dose independent rect. 6 10
671 149.08 precipitation 0.1 270 < th dose independent rect. 6 11
672 149.08 precipitation 0.1 270 < th dose dependent rect. 6 11
689 149.13 radiation 10.0 10 < th dose independent rect. 4 19
690 149.14 wind 7.0 270 < th dose independent rect. 23 1
695 149.16 atmosphere 995.0 270 > th dose dependent rect. 21 4
699 149.20 precipitation 0.1 270 < th dose independent rect. 21 13
700 149.20 precipitation 0.1 270 < th dose dependent rect. 21 13
703 149.23 temperature 10.0 270 > th dose independent rect. 23 1
704 149.23 temperature 30.0 270 < th dose independent rect. 23 1
705 149.23 humidity 50.0 270 > th dose independent rect. 23 1
708 149.23 atmosphere 995.0 270 > th dose independent rect. 23 1
709 149.23 radiation 1.0 270 < th dose independent rect. 23 1
725 149.23 radiation 1.0 270 < th dose dependent rect. 23 1
742 149.38 precipitation 0.1 270 < th dose independent rect. 23 1
743 149.38 precipitation 0.1 270 < th dose dependent rect. 23 1
753 149.49 temperature 10.0 270 > th dose independent rect. 6 10
754 149.49 atmosphere 1015.0 270 < th dose independent rect. 6 10
790 149.76 atmosphere 995.0 10 > th dose independent rect. 8 20
809 149.82 wind 1.0 270 > th dose independent rect. 10 11
830 150.12 wind 9.0 270 < th dose independent rect. 16 14
849 150.34 atmosphere 995.0 270 > th dose independent rect. 6 10
883 150.81 wind 1.0 270 > th dose independent rect. 6 20
889 150.84 humidity 50.0 270 > th dose dependent rect. 23 1
930 151.03 wind 9.0 270 < th dose independent rect. 21 4
937 151.06 temperature 10.0 270 > th dose independent rect. 21 4
938 151.06 temperature 30.0 270 < th dose independent rect. 21 4
939 151.06 humidity 50.0 270 > th dose independent rect. 21 4
942 151.06 atmosphere 995.0 270 > th dose independent rect. 21 4
943 151.06 radiation 1.0 270 < th dose independent rect. 21 4
951 151.06 radiation 1.0 270 < th dose dependent rect. 21 4
963 151.14 atmosphere 995.0 90 > th dose dependent rect. 7 20
981 151.24 wind 9.0 270 < th dose independent rect. 11 10
991 151.35 precipitation 0.1 270 < th dose independent rect. 21 4
992 151.35 precipitation 0.1 270 < th dose dependent rect. 21 4