Os09g0441700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cytochrome P450.
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Os09g0441700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cytochrome P450.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 354.49 | 0.885 | 5.7 | -3.26 | 1.42 | 1.98 | -0.0209 | -6.22 | -0.465 | 5.41 | 29.81 | 5803 | -- | -- |
| 361.87 | 0.886 | 5.52 | -1.8 | 1.43 | 1.38 | -0.0453 | -- | -0.305 | 5.62 | 29.56 | 5698 | -- | -- |
| 354.49 | 0.877 | 5.7 | -3.26 | 1.42 | 1.98 | -- | -6.22 | -0.465 | 5.41 | 29.8 | 5802 | -- | -- |
| 361.74 | 0.886 | 5.54 | -1.79 | 1.4 | 1.35 | -- | -- | -0.329 | 5.67 | 29.51 | 5698 | -- | -- |
| 451.86 | 0.99 | 5.7 | -3.17 | -- | 2.18 | -- | -6.61 | -0.249 | -- | 30.1 | 5659 | -- | -- |
| 452.93 | 0.998 | 5.55 | -1.34 | 1.5 | -- | -0.0273 | -- | -0.37 | 5.52 | -- | -- | -- | -- |
| 452.93 | 0.997 | 5.55 | -1.34 | 1.5 | -- | -- | -- | -0.37 | 5.51 | -- | -- | -- | -- |
| 462.08 | 1 | 5.54 | -1.78 | -- | 1.47 | -- | -- | -0.225 | -- | 29.7 | 5667 | -- | -- |
| 440.46 | 0.977 | 5.49 | -- | 1.5 | 1.16 | -- | -- | -0.116 | 5.56 | 30.5 | 6099 | -- | -- |
| 570.07 | 1.12 | 5.57 | -1.29 | -- | -- | -- | -- | -0.333 | -- | -- | -- | -- | -- |
| 500.38 | 1.05 | 5.51 | -- | 1.48 | -- | -- | -- | -0.22 | 5.55 | -- | -- | -- | -- |
| 536.55 | 1.08 | 5.49 | -- | -- | 1.16 | -- | -- | 0.0408 | -- | 30.47 | 5628 | -- | -- |
| 614.12 | 1.16 | 5.54 | -- | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 350.77 | humidity | 60 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 2 | 351.56 | humidity | 90 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 3 | 351.75 | humidity | 50 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 8 | 352.13 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 10 | 352.37 | humidity | 60 | 14400 | > th | dose dependent | rect. | 12 | 7 |
| 11 | 352.40 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 17 | 352.88 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 18 | 352.96 | wind | 3 | 43200 | > th | dose independent | sin | 7 | NA |
| 20 | 352.98 | humidity | 60 | 14400 | > th | dose dependent | rect. | 14 | 5 |
| 22 | 353.01 | wind | 3 | 43200 | < th | dose independent | sin | 7 | NA |
| 26 | 353.15 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 11 |
| 29 | 353.17 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 12 |
| 35 | 353.30 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 47 | 353.45 | humidity | 60 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 61 | 353.78 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 11 |
| 76 | 354.02 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 91 | 354.29 | wind | 3 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 110 | 354.56 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 118 | 354.65 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 124 | 354.69 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 127 | 354.75 | humidity | 60 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 163 | 355.25 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 167 | 355.30 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 173 | 355.45 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 205 | 355.87 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 13 |
| 207 | 355.93 | wind | 5 | 43200 | < th | dose dependent | sin | 6 | NA |
| 219 | 356.04 | wind | 5 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 233 | 356.21 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 248 | 356.41 | humidity | 80 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 271 | 356.65 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 5 |
| 279 | 356.68 | wind | 5 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 283 | 356.70 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 14 |
| 329 | 357.14 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 16 |
| 347 | 357.35 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 351 | 357.38 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 3 |
| 366 | 357.48 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 371 | 357.49 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 375 | 357.55 | wind | 1 | 43200 | > th | dose dependent | sin | 5 | NA |
| 391 | 357.65 | wind | 9 | 43200 | < th | dose dependent | sin | 5 | NA |
| 399 | 357.73 | humidity | 80 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 403 | 357.75 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 3 |
| 407 | 357.77 | humidity | 90 | 14400 | < th | dose dependent | rect. | 12 | 3 |
| 424 | 357.87 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 439 | 358.00 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 14 |
| 465 | 358.14 | humidity | 60 | 14400 | > th | dose dependent | sin | 20 | NA |
| 466 | 358.14 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 14 |
| 467 | 358.16 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 493 | 358.29 | humidity | 80 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 505 | 358.39 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 506 | 358.39 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 3 |
| 507 | 358.40 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 5 |
| 516 | 358.44 | humidity | 80 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 535 | 358.58 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 558 | 358.75 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 12 |
| 573 | 358.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 583 | 358.89 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 584 | 358.89 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 10 |
| 612 | 359.06 | humidity | 70 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 640 | 359.21 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 668 | 359.39 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 690 | 359.52 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 702 | 359.65 | humidity | 70 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 753 | 359.92 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 18 |
| 762 | 359.95 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 18 |
| 800 | 360.22 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 826 | 360.32 | humidity | 80 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 833 | 360.36 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 14 |
| 853 | 360.47 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 875 | 360.56 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 986 | 361.06 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 6 |