Os09g0441000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SBT1 protein (Subtilisin-like protease).
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Os09g0441000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SBT1 protein (Subtilisin-like protease).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1015.21 | 1.5 | 7.88 | -2.25 | 4.09 | -6.32 | 10.1 | -5.83 | -1.07 | 5.51 | 55.91 | 773 | 11 | -- |
| 1041.33 | 1.5 | 7.86 | -2.24 | 4.68 | -6.68 | 8.16 | -- | -1.08 | 5.76 | 48.97 | 852 | 10.7 | -- |
| 1127.05 | 1.56 | 7.66 | -2.43 | 8.18 | -9.27 | -- | 7.37 | -0.987 | 6.45 | 23.47 | 901 | 8.48 | -- |
| 1177.46 | 1.6 | 7.89 | -2.35 | 4.62 | -6.59 | -- | -- | -1.08 | 5.94 | 50.76 | 867 | 10.6 | -- |
| 1228.15 | 1.63 | 8 | -2.35 | -- | -4.57 | -- | -4.26 | -1.22 | -- | 15.17 | 1930 | 14 | -- |
| 1428 | 1.77 | 7.92 | -2.57 | 2.27 | -- | 6.31 | -- | -1.11 | 8.02 | -- | -- | -- | -- |
| 1538.52 | 1.84 | 7.92 | -2.38 | 2.27 | -- | -- | -- | -1.11 | 8.65 | -- | -- | -- | -- |
| 1275.56 | 1.66 | 8 | -2.46 | -- | -5.08 | -- | -- | -1.18 | -- | 17.23 | 1792 | 12.8 | -- |
| 1330.38 | 1.7 | 7.82 | -- | 4.98 | -6.76 | -- | -- | -0.917 | 6.5 | 56.45 | 857 | 9.77 | -- |
| 1827.94 | 2 | 7.98 | -2.38 | -- | -- | -- | -- | -1.09 | -- | -- | -- | -- | -- |
| 1688.24 | 1.92 | 7.86 | -- | 2.26 | -- | -- | -- | -0.845 | 8.73 | -- | -- | -- | -- |
| 1431.1 | 1.76 | 7.94 | -- | -- | -4.95 | -- | -- | -0.931 | -- | 5.351 | 1670 | 11.5 | -- |
| 1977.03 | 2.08 | 7.92 | -- | -- | -- | -- | -- | -0.827 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1009.36 | humidity | 60 | 720 | > th | dose dependent | rect. | 14 | 10 |
| 6 | 1018.77 | humidity | 60 | 720 | > th | dose dependent | sin | 17 | NA |
| 7 | 1019.31 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 39 | 1030.24 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 18 |
| 62 | 1036.06 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 77 | 1040.16 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 12 |
| 83 | 1041.49 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 10 |
| 103 | 1044.09 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 17 |
| 119 | 1048.24 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 11 |
| 122 | 1048.72 | humidity | 60 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 233 | 1065.04 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 18 |
| 257 | 1067.32 | humidity | 80 | 720 | > th | dose independent | sin | 19 | NA |
| 305 | 1072.64 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 377 | 1078.76 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 435 | 1084.60 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 497 | 1090.14 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 18 |
| 510 | 1090.90 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 18 |
| 565 | 1094.52 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 11 |
| 613 | 1098.29 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 22 |
| 615 | 1098.42 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 619 | 1098.81 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 639 | 1100.09 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 647 | 1100.40 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 664 | 1100.75 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 15 |
| 721 | 1103.28 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 751 | 1105.52 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 22 |
| 755 | 1105.76 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 3 |
| 758 | 1105.92 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 5 |
| 784 | 1106.92 | humidity | 90 | 720 | < th | dose dependent | sin | 15 | NA |
| 786 | 1106.98 | temperature | 25 | 720 | > th | dose dependent | sin | 15 | NA |
| 830 | 1108.96 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 11 |
| 851 | 1109.76 | humidity | 80 | 720 | < th | dose dependent | sin | 12 | NA |
| 865 | 1110.37 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 867 | 1110.38 | humidity | 80 | 720 | < th | dose independent | sin | 20 | NA |
| 899 | 1111.67 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 912 | 1112.24 | humidity | 60 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 930 | 1112.95 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 940 | 1113.34 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 1 |
| 942 | 1113.36 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 948 | 1113.65 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 17 |