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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0438100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0755) R2 : 0.88
β1 : -4.55 (0.277) R2dD : 0.0745 R2D : 0.0495
β2 : 6.06 (0.287) R2dC : 0.268 R2C : 0.56
β3 : -3.66 (0.22) R2dE : 0.168 R2E : 0.504
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -2.31 (0.164) R2dN8 : 0.0724 R2N8 : 0.0485
σ : 1.41
deviance : 914.8
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_____
C
peak time of C : 8.33
E
wheather : temperature
threshold : 21.3
memory length : 103
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.2
open length of G : 12.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
892.16 1.4 10.3 -4.68 6.12 -3.56 2.79 -0.314 -2.35 8.33 21.15 83 15.2 12.4
889.42 1.39 10.3 -4.68 6.09 -3.62 2.48 -- -2.3 8.32 21.23 94 15.2 12.3
902.48 1.4 10.3 -4.79 6.05 -3.63 -- -1.68 -2.37 8.38 21.3 98 15.2 12.2
914.8 1.41 10.3 -4.55 6.06 -3.66 -- -- -2.31 8.33 21.3 103 15.2 12.1
1413.44 1.75 10.5 -4.87 -- -7.5 -- -2.64 -2.58 -- -16.98 263 12.7 12.3
1395.28 1.75 10.3 -5.05 9.58 -- 3.28 -- -2.81 8.66 -- -- -- --
1430.56 1.77 10.3 -4.94 9.57 -- -- -- -2.81 8.66 -- -- -- --
1443.39 1.77 10.5 -4.94 -- -7.48 -- -- -2.66 -- 5.77 266 12.7 12.3
1410.04 1.75 10.1 -- 5.29 -4.41 -- -- -1.49 8.28 21.74 145 14.7 12.3
6601.58 3.8 10.5 -4.92 -- -- -- -- -2.73 -- -- -- -- --
2074.72 2.13 10.1 -- 9.56 -- -- -- -2.26 8.7 -- -- -- --
2087.06 2.13 10.4 -- -- -7.5 -- -- -2.11 -- 5.38 272 12.6 12.4
7240.09 3.97 10.4 -- -- -- -- -- -2.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 986.31 temperature 20 90 > th dose independent rect. 15 13
6 1017.06 temperature 20 4320 < th dose independent rect. 21 2
7 1017.63 temperature 20 4320 > th dose independent rect. 21 2
8 1017.68 temperature 10 270 > th dose dependent rect. 14 12
9 1018.78 temperature 20 270 > th dose independent rect. 13 13
12 1019.65 temperature 15 10 > th dose dependent rect. 16 12
13 1019.85 temperature 25 270 < th dose dependent sin 16 NA
18 1021.60 temperature 25 270 < th dose dependent rect. 10 17
19 1022.88 temperature 25 270 < th dose dependent rect. 17 10
24 1024.38 temperature 20 4320 < th dose independent rect. 20 4
46 1030.56 temperature 30 90 < th dose dependent rect. 19 12
47 1030.91 temperature 25 1440 < th dose dependent rect. 24 1
51 1031.55 temperature 15 90 > th dose dependent sin 12 NA
68 1035.62 temperature 15 1440 > th dose dependent rect. 24 1
74 1036.93 temperature 20 4320 > th dose independent rect. 19 9
95 1038.97 temperature 25 1440 < th dose dependent rect. 24 3
100 1039.81 temperature 20 4320 < th dose independent rect. 19 9
105 1040.24 temperature 25 1440 < th dose dependent rect. 2 1
124 1042.03 temperature 15 1440 > th dose dependent rect. 24 3
135 1043.34 temperature 15 1440 > th dose dependent rect. 2 1
294 1052.75 temperature 20 4320 > th dose independent sin 13 NA
377 1055.84 temperature 20 4320 < th dose independent sin 13 NA
402 1056.70 temperature 20 4320 > th dose independent rect. 2 1
459 1058.66 temperature 20 4320 < th dose independent rect. 2 2
537 1060.88 temperature 25 1440 < th dose dependent sin 10 NA
792 1068.77 humidity 60 43200 > th dose independent rect. 19 15
798 1068.93 wind 1 43200 < th dose dependent rect. 22 4
913 1072.13 humidity 70 43200 < th dose dependent rect. 20 14
979 1073.29 temperature 25 1440 < th dose dependent rect. 5 1