Os09g0436600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0436600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.18 | 0.216 | 9.93 | 0.455 | 0.343 | 0.301 | 0.031 | -0.926 | -0.18 | 0.137 | 92.23 | 3939 | -- | -- |
| 22.17 | 0.219 | 9.91 | 0.345 | 0.348 | 0.389 | 0.172 | -- | -0.193 | 0.245 | 93.36 | 3803 | -- | -- |
| 21.18 | 0.214 | 9.93 | 0.454 | 0.343 | 0.301 | -- | -0.921 | -0.181 | 0.108 | 92.3 | 3932 | -- | -- |
| 22.22 | 0.22 | 9.92 | 0.327 | 0.353 | 0.377 | -- | -- | -0.208 | 24 | 93.39 | 3740 | -- | -- |
| 28.15 | 0.248 | 9.93 | 0.319 | -- | 0.33 | -- | 0.0955 | -0.261 | -- | 92.3 | 3932 | -- | -- |
| 24.44 | 0.232 | 9.94 | 0.355 | 0.327 | -- | 0.192 | -- | -0.309 | 0.48 | -- | -- | -- | -- |
| 24.58 | 0.232 | 9.94 | 0.348 | 0.326 | -- | -- | -- | -0.31 | 0.302 | -- | -- | -- | -- |
| 28.17 | 0.248 | 9.93 | 0.32 | -- | 0.337 | -- | -- | -0.26 | -- | 92.3 | 3932 | -- | -- |
| 24.83 | 0.232 | 9.92 | -- | 0.359 | 0.387 | -- | -- | -0.218 | 24 | 92.45 | 3720 | -- | -- |
| 31.28 | 0.261 | 9.94 | 0.359 | -- | -- | -- | -- | -0.305 | -- | -- | -- | -- | -- |
| 27.78 | 0.247 | 9.95 | -- | 0.331 | -- | -- | -- | -0.349 | 0.358 | -- | -- | -- | -- |
| 30.83 | 0.259 | 9.93 | -- | -- | 0.361 | -- | -- | -0.289 | -- | 92 | 3236 | -- | -- |
| 34.68 | 0.275 | 9.95 | -- | -- | -- | -- | -- | -0.345 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 50 | 20.26 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 55 | 20.31 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 58 | 20.32 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 5 |
| 66 | 20.35 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 78 | 20.43 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 93 | 20.47 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 153 | 20.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 158 | 20.64 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 181 | 20.69 | temperature | 15 | 270 | > th | dose dependent | sin | 4 | NA |
| 311 | 20.92 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 371 | 21.04 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 4 | 1 |
| 419 | 21.12 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 9 |
| 435 | 21.14 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 13 |
| 451 | 21.15 | temperature | 20 | 10 | > th | dose dependent | sin | 4 | NA |
| 453 | 21.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 478 | 21.17 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 498 | 21.19 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 11 |
| 551 | 21.24 | temperature | 20 | 720 | < th | dose independent | sin | 5 | NA |
| 552 | 21.24 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 627 | 21.32 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 1 |
| 639 | 21.33 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 679 | 21.36 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 20 |
| 690 | 21.37 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 7 |
| 775 | 21.43 | temperature | 15 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 797 | 21.45 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 1 | 4 |
| 807 | 21.45 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 7 |
| 809 | 21.45 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 827 | 21.46 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 13 |
| 832 | 21.47 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 4 | 2 |
| 852 | 21.49 | humidity | 90 | 10 | > th | dose independent | rect. | 4 | 8 |
| 875 | 21.50 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 10 |
| 909 | 21.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 10 |
| 937 | 21.54 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 3 | 4 |
| 947 | 21.54 | humidity | 90 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 948 | 21.54 | humidity | 90 | 4320 | > th | dose dependent | rect. | 2 | 8 |
| 955 | 21.55 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 962 | 21.55 | wind | 5 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 996 | 21.56 | temperature | 10 | 10 | > th | dose dependent | rect. | 4 | 14 |
| 998 | 21.57 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 1 |