Os09g0436300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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Os09g0436300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.44 | 0.259 | 8.91 | -0.128 | 0.474 | 0.647 | 0.269 | 0.284 | -0.123 | 0.186 | 29.29 | 4670 | -- | -- |
| 30.42 | 0.257 | 8.89 | -0.0525 | 0.467 | 0.7 | 0.281 | -- | -0.0778 | 0.208 | 28.9 | 4594 | -- | -- |
| 30.76 | 0.258 | 8.91 | -0.141 | 0.473 | 0.644 | -- | 0.292 | -0.124 | 0.193 | 29.27 | 4670 | -- | -- |
| 30.72 | 0.258 | 8.89 | -0.0617 | 0.459 | 0.69 | -- | -- | -0.0752 | 0.179 | 28.9 | 4640 | -- | -- |
| 43.97 | 0.309 | 8.89 | -0.174 | -- | 0.632 | -- | 0.195 | -0.0867 | -- | 28.78 | 4643 | -- | -- |
| 47.7 | 0.324 | 8.9 | -0.262 | 0.437 | -- | 0.197 | -- | -0.108 | 0.406 | -- | -- | -- | -- |
| 47.87 | 0.324 | 8.9 | -0.27 | 0.436 | -- | -- | -- | -0.109 | 0.418 | -- | -- | -- | -- |
| 43.83 | 0.308 | 8.87 | -0.0501 | -- | 0.579 | -- | -- | -0.00716 | -- | 28.9 | 5994 | -- | -- |
| 30.82 | 0.259 | 8.89 | -- | 0.459 | 0.697 | -- | -- | -0.0682 | 0.221 | 28.9 | 4645 | -- | -- |
| 59.81 | 0.361 | 8.89 | -0.255 | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
| 49.79 | 0.33 | 8.89 | -- | 0.432 | -- | -- | -- | -0.0785 | 0.386 | -- | -- | -- | -- |
| 43.85 | 0.308 | 8.88 | -- | -- | 0.694 | -- | -- | -0.0472 | -- | 28.79 | 4641 | -- | -- |
| 61.53 | 0.366 | 8.88 | -- | -- | -- | -- | -- | -0.0731 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.77 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 2 | 29.93 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 4 | 30.08 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 17 | 30.25 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 14 |
| 19 | 30.26 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 36 | 30.30 | temperature | 25 | 4320 | > th | dose dependent | sin | 5 | NA |
| 45 | 30.33 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 14 |
| 64 | 30.42 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 110 | 30.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 123 | 30.60 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 128 | 30.63 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 135 | 30.66 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 182 | 30.79 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 198 | 30.84 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 202 | 30.85 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 204 | 30.85 | humidity | 90 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 205 | 30.86 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 206 | 30.86 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 225 | 30.89 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 248 | 30.92 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 5 |
| 249 | 30.92 | humidity | 70 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 253 | 30.93 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 255 | 30.94 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 275 | 30.95 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 294 | 30.97 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 300 | 30.98 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 21 |
| 305 | 30.99 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 306 | 30.99 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 12 |
| 316 | 30.99 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 320 | 30.99 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 19 |
| 330 | 30.99 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 352 | 31.01 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 353 | 31.01 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 5 |
| 436 | 31.10 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 454 | 31.11 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 455 | 31.11 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 457 | 31.11 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 515 | 31.17 | temperature | 30 | 4320 | < th | dose independent | sin | 0 | NA |
| 517 | 31.17 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 532 | 31.18 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 536 | 31.18 | temperature | 10 | 4320 | > th | dose dependent | rect. | 8 | 6 |
| 573 | 31.22 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 22 |
| 574 | 31.22 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 600 | 31.25 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 601 | 31.25 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 681 | 31.25 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 21 |
| 773 | 31.28 | temperature | 30 | 4320 | > th | dose independent | sin | 23 | NA |
| 789 | 31.29 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 18 |
| 816 | 31.30 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 834 | 31.31 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 22 |
| 838 | 31.31 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 860 | 31.33 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 915 | 31.35 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |