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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0433400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.22 (0.0339) R2 : 0.602
β1 : 1.09 (0.124) R2dD : 0.0701 R2D : 0.0429
β2 : 2.09 (0.0863) R2dC : 0.516 R2C : 0.493
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.526 (0.0723) R2dN8 : 0.0618 R2N8 : 0.0179
σ : 0.637
deviance : 185.05
__
_____
C
peak time of C : 20
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
154.91 0.585 4.21 1.34 2.07 -1.21 0.794 -3 0.405 20.6 26.95 75 -- --
169.02 0.61 4.27 0.867 2.12 -1.01 0.422 -- 0.305 20.5 26.95 75 -- --
156.84 0.583 4.22 1.3 2.06 -1.18 -- -2.83 0.405 20.6 27.11 78 -- --
169.14 0.606 4.27 0.839 2.07 -1.03 -- -- 0.307 20.5 27.87 66 -- --
303.97 0.812 4.19 0.945 -- -2.65 -- -2.99 0.236 -- 49.87 561 -- --
183.78 0.636 4.22 1.11 2.09 -- 0.663 -- 0.526 19.9 -- -- -- --
185.05 0.637 4.22 1.09 2.09 -- -- -- 0.526 20 -- -- -- --
310.53 0.821 4.25 0.445 -- -2.71 -- -- 0.102 -- 62.59 567 -- --
185.74 0.635 4.27 -- 2.08 -1.37 -- -- 0.145 20.8 28 54 -- --
423.59 0.962 4.16 1.07 -- -- -- -- 0.499 -- -- -- -- --
216.45 0.688 4.24 -- 2.08 -- -- -- 0.404 20 -- -- -- --
315.29 0.827 4.27 -- -- -2.87 -- -- 0.0334 -- 45.21 575 -- --
453.79 0.994 4.19 -- -- -- -- -- 0.38 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 147.22 temperature 30 90 < th dose dependent rect. 17 14
3 148.24 temperature 30 270 < th dose dependent rect. 15 14
5 148.56 temperature 30 90 < th dose dependent sin 14 NA
9 148.91 temperature 10 270 > th dose dependent rect. 13 12
10 149.02 temperature 25 270 < th dose dependent sin 17 NA
32 150.40 temperature 30 30 < th dose dependent rect. 19 12
41 150.66 temperature 25 270 < th dose dependent rect. 10 17
51 150.99 temperature 10 720 > th dose dependent rect. 13 5
56 151.07 temperature 25 720 < th dose dependent rect. 15 5
73 151.45 temperature 25 720 < th dose dependent rect. 10 11
116 152.23 temperature 10 90 > th dose dependent sin 14 NA
240 153.90 temperature 20 10 > th dose dependent rect. 14 14
243 153.92 temperature 25 720 < th dose independent rect. 15 4
248 154.00 temperature 25 10 < th dose dependent rect. 11 19
272 154.22 temperature 25 10 < th dose dependent rect. 15 11
307 154.48 temperature 25 720 < th dose independent rect. 14 6
333 154.60 temperature 25 10 < th dose dependent rect. 11 15
363 154.77 temperature 25 270 < th dose independent sin 17 NA
422 155.14 temperature 25 720 > th dose independent rect. 14 4
429 155.17 temperature 20 90 > th dose dependent sin 14 NA
449 155.28 temperature 25 720 < th dose independent rect. 11 10
459 155.37 temperature 25 720 > th dose independent rect. 13 6
467 155.44 temperature 25 270 > th dose independent rect. 13 13
470 155.46 temperature 20 10 > th dose dependent rect. 16 12
499 155.59 temperature 25 10 < th dose dependent rect. 8 22
533 155.74 temperature 30 10 < th dose dependent rect. 17 19
548 155.84 temperature 25 90 < th dose dependent rect. 15 21
553 155.88 temperature 25 270 < th dose independent rect. 14 13
667 156.30 temperature 25 90 < th dose dependent rect. 3 23
700 156.44 temperature 25 90 < th dose dependent no NA NA
774 156.72 temperature 25 90 < th dose dependent rect. 21 23
855 157.08 temperature 25 270 > th dose independent sin 18 NA
857 157.08 temperature 25 10 < th dose dependent rect. 17 23
859 157.10 temperature 25 10 < th dose dependent no NA NA
866 157.11 temperature 25 30 < th dose dependent rect. 23 23
884 157.18 temperature 25 90 < th dose dependent rect. 1 23
885 157.18 temperature 30 30 < th dose dependent rect. 19 23
941 157.39 temperature 25 270 < th dose independent rect. 11 16
970 157.54 temperature 25 10 < th dose dependent rect. 5 23