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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0432300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6 (0.0709) R2 : 0.569
β1 : 5.96 (0.307) R2dD : 0.565 R2D : 0.23
β2 : 0.831 (0.166) R2dC : 0.024 R2C : 0.0206
β3 : -3.24 (0.258) R2dE : 0.267 R2E : -0.0563
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.441 (0.171) R2dN8 : 0.0119 R2N8 : 0.0737
σ : 1.27
deviance : 739.33
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_____
C
peak time of C : 9.48
E
wheather : temperature
threshold : 20.97
memory length : 5780
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 22.9
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
727.24 1.27 5.99 5.91 0.997 -3.25 2.01 0.271 -0.428 9.96 21.1 5992 23 --
727.38 1.26 5.99 5.88 1.02 -3.28 2.03 -- -0.437 9.92 21.09 5995 23 --
739.47 1.27 6 5.99 0.875 -3.23 -- 0.0721 -0.43 9.46 21 5798 23.1 --
739.33 1.27 6 5.96 0.831 -3.24 -- -- -0.441 9.48 20.97 5780 22.9 --
771.39 1.29 6.06 5.72 -- -3.33 -- -0.517 -0.557 -- 21 5605 22.1 --
975.41 1.46 6.27 3.6 0.833 -- 2.16 -- -1.6 10.5 -- -- -- --
993.6 1.48 6.26 3.68 0.841 -- -- -- -1.6 9.85 -- -- -- --
771.2 1.29 6.01 6.12 -- -3.52 -- -- -0.473 -- 21.1 5607 21.9 --
1320 1.69 6.26 -- 0.745 -1 -- -- -1.63 10.4 22.5 2783 22.5 --
1035.92 1.5 6.28 3.67 -- -- -- -- -1.6 -- -- -- -- --
1350.92 1.72 6.35 -- 0.833 -- -- -- -2.01 9.52 -- -- -- --
1321.38 1.69 6.27 -- -- -1.31 -- -- -1.56 -- 22.8 3297 9.1 --
1391.81 1.74 6.38 -- -- -- -- -- -2 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 672.23 radiation 10 43200 < th dose independent rect. 16 1
4 674.02 radiation 10 43200 < th dose independent rect. 16 8
6 674.03 radiation 10 43200 < th dose independent rect. 16 10
27 675.20 radiation 10 43200 < th dose independent rect. 15 15
29 675.36 radiation 10 43200 < th dose independent rect. 12 6
31 675.58 radiation 10 43200 < th dose independent rect. 12 11
33 675.58 radiation 10 43200 < th dose independent rect. 12 14
62 675.91 radiation 10 43200 < th dose independent sin 15 NA
99 678.93 humidity 90 43200 > th dose dependent rect. 5 2
101 679.54 atmosphere 1015 43200 < th dose independent rect. 14 7
102 679.63 atmosphere 1015 43200 < th dose independent rect. 16 5
108 680.26 atmosphere 1010 43200 > th dose dependent rect. 5 2
118 680.91 atmosphere 1015 43200 > th dose independent rect. 12 10
123 681.22 atmosphere 1010 43200 < th dose independent rect. 11 1
148 681.86 atmosphere 1010 43200 > th dose independent rect. 11 1
160 682.10 atmosphere 1010 43200 > th dose dependent rect. 9 2
168 682.19 radiation 30 43200 < th dose independent rect. 15 17
223 682.88 atmosphere 1010 43200 > th dose dependent sin 4 NA
274 683.27 atmosphere 1015 43200 < th dose independent rect. 12 5
275 683.29 atmosphere 1015 43200 > th dose independent rect. 13 2
277 683.30 atmosphere 1015 43200 > th dose independent rect. 12 4
284 683.35 radiation 10 43200 > th dose dependent rect. 17 13
308 683.64 atmosphere 1015 43200 < th dose independent rect. 13 3
320 683.76 atmosphere 1010 43200 < th dose independent rect. 4 1
342 684.02 wind 9 43200 > th dose independent rect. 9 8
369 684.23 atmosphere 1015 43200 < th dose independent rect. 14 1
374 684.24 atmosphere 1010 43200 > th dose dependent rect. 16 20
410 684.42 atmosphere 1010 43200 > th dose independent rect. 4 1
442 684.56 atmosphere 1010 43200 > th dose dependent no NA NA
453 684.60 atmosphere 1010 43200 > th dose dependent rect. 4 23
466 684.65 atmosphere 1010 43200 > th dose dependent rect. 9 23
518 684.96 atmosphere 1010 43200 > th dose independent rect. 10 6
524 685.00 atmosphere 1010 43200 > th dose independent rect. 15 1
568 685.30 atmosphere 1015 43200 > th dose independent rect. 18 3
581 685.40 atmosphere 1010 43200 > th dose dependent rect. 17 2
584 685.42 atmosphere 1010 43200 > th dose dependent rect. 16 4
777 686.51 atmosphere 1015 43200 > th dose independent sin 19 NA
787 686.59 radiation 40 43200 < th dose independent rect. 13 1
813 686.74 radiation 10 43200 > th dose dependent rect. 17 1
840 686.82 atmosphere 1010 43200 > th dose independent rect. 3 15
843 686.84 radiation 30 43200 < th dose independent sin 13 NA
853 686.93 atmosphere 1015 43200 < th dose independent sin 19 NA
854 686.94 wind 9 43200 < th dose independent rect. 9 8
862 686.98 radiation 10 43200 < th dose independent rect. 5 18
869 686.99 radiation 10 43200 < th dose independent no NA NA
872 686.99 radiation 10 43200 < th dose independent rect. 5 14
874 686.99 radiation 10 43200 < th dose independent rect. 3 16
887 686.99 radiation 10 43200 < th dose independent rect. 22 21
924 687.03 atmosphere 1015 43200 < th dose independent rect. 12 17