Os09g0431500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TATA box-binding protein associated factor 10.
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Os09g0431500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TATA box-binding protein associated factor 10.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.56 | 0.179 | 12.1 | 0.593 | 0.353 | 0.345 | 0.0918 | 0.704 | 0.394 | 3.72 | 52.18 | 7493 | -- | -- |
| 15 | 0.18 | 12.1 | 0.611 | 0.353 | 0.404 | 0.149 | -- | 0.4 | 3.91 | 52 | 7307 | -- | -- |
| 14.53 | 0.178 | 12.1 | 0.595 | 0.36 | 0.345 | -- | 0.69 | 0.388 | 3.76 | 52.24 | 7319 | -- | -- |
| 15.01 | 0.18 | 12.1 | 0.618 | 0.353 | 0.414 | -- | -- | 0.396 | 3.82 | 51.7 | 7307 | -- | -- |
| 21.45 | 0.216 | 12.1 | 0.592 | -- | 0.38 | -- | 0.567 | 0.404 | -- | 52.02 | 7501 | -- | -- |
| 18.19 | 0.2 | 12.1 | 0.519 | 0.363 | -- | 0.0156 | -- | 0.403 | 3.72 | -- | -- | -- | -- |
| 18.19 | 0.2 | 12.1 | 0.518 | 0.363 | -- | -- | -- | 0.403 | 3.72 | -- | -- | -- | -- |
| 21.81 | 0.217 | 12.1 | 0.634 | -- | 0.437 | -- | -- | 0.406 | -- | 51 | 7457 | -- | -- |
| 17.97 | 0.197 | 12.1 | -- | 0.368 | 0.563 | -- | -- | 0.244 | 3.7 | 56.98 | 26997 | -- | -- |
| 25.5 | 0.236 | 12.1 | 0.534 | -- | -- | -- | -- | 0.413 | -- | -- | -- | -- | -- |
| 25.28 | 0.235 | 12.1 | -- | 0.374 | -- | -- | -- | 0.345 | 3.7 | -- | -- | -- | -- |
| 25.39 | 0.235 | 12.1 | -- | -- | 0.631 | -- | -- | 0.328 | -- | 60.63 | 27700 | -- | -- |
| 33.01 | 0.268 | 12.1 | -- | -- | -- | -- | -- | 0.354 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.47 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 14.65 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 14 |
| 3 | 14.66 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 14 |
| 4 | 14.66 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 14 |
| 5 | 14.70 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 18 | 14.77 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 20 | 14.77 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 22 | 14.78 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 25 | 14.78 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 26 | 14.79 | wind | 3.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 31 | 14.81 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 1 | NA |
| 32 | 14.81 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 33 | 14.81 | wind | 3.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 41 | 14.83 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 1 | NA |
| 43 | 14.83 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 44 | 14.83 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 2 | NA |
| 45 | 14.83 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 47 | 14.83 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 20 | 15 |
| 61 | 14.86 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 74 | 14.88 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 83 | 14.89 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 15 |
| 90 | 14.91 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 112 | 14.92 | humidity | 80.0 | 4320 | < th | dose dependent | sin | 9 | NA |
| 118 | 14.93 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 141 | 14.94 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 149 | 14.95 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 159 | 14.96 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 174 | 14.97 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 185 | 14.98 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 203 | 15.00 | humidity | 50.0 | 4320 | > th | dose independent | sin | 16 | NA |
| 208 | 15.00 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 247 | 15.02 | humidity | 50.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 258 | 15.03 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 261 | 15.03 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 289 | 15.03 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 11 |
| 333 | 15.05 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 355 | 15.05 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 357 | 15.05 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 9 | 5 |
| 359 | 15.05 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 369 | 15.05 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 15 | 22 |
| 371 | 15.06 | humidity | 60.0 | 4320 | > th | dose independent | sin | 7 | NA |
| 373 | 15.06 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 374 | 15.06 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 376 | 15.06 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 9 | 4 |
| 377 | 15.06 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 379 | 15.06 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 18 | 20 |
| 382 | 15.06 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 2 |
| 392 | 15.07 | humidity | 50.0 | 4320 | < th | dose independent | sin | 15 | NA |
| 425 | 15.07 | radiation | 30.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 427 | 15.07 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 435 | 15.07 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 13 | 5 |
| 438 | 15.07 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 24 | 9 |
| 457 | 15.08 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 488 | 15.08 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 13 | 20 |
| 562 | 15.10 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 563 | 15.10 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 573 | 15.10 | humidity | 70.0 | 4320 | < th | dose dependent | sin | 0 | NA |
| 580 | 15.10 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 594 | 15.10 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 9 | 9 |
| 644 | 15.10 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 19 | 23 |
| 673 | 15.11 | humidity | 70.0 | 4320 | < th | dose dependent | no | NA | NA |
| 674 | 15.11 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 683 | 15.11 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 6 |
| 777 | 15.11 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 12 | 23 |
| 785 | 15.12 | humidity | 50.0 | 4320 | > th | dose independent | no | NA | NA |
| 788 | 15.12 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 792 | 15.12 | wind | 1.0 | 14400 | > th | dose independent | rect. | 3 | 7 |
| 795 | 15.12 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 8 | 10 |
| 800 | 15.12 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 3 | 15 |
| 823 | 15.12 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 22 | 20 |
| 831 | 15.12 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 834 | 15.12 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 19 | 22 |
| 845 | 15.12 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 16 | NA |
| 852 | 15.12 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 869 | 15.12 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 9 |