Os09g0429600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os09g0429600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 138.32 | 0.553 | 5.65 | 1.21 | 0.505 | -1.84 | 0.231 | 1.38 | 0.287 | 17.1 | 19.12 | 454 | -- | -- |
| 139.35 | 0.55 | 5.68 | 1.01 | 0.485 | -2.03 | 0.359 | -- | 0.212 | 16.7 | 16.13 | 434 | -- | -- |
| 138.25 | 0.548 | 5.64 | 1.28 | 0.531 | -1.84 | -- | 1.82 | 0.307 | 17.1 | 20 | 453 | -- | -- |
| 139.76 | 0.551 | 5.67 | 0.998 | 0.455 | -2 | -- | -- | 0.228 | 17.2 | 16.33 | 478 | -- | -- |
| 143.24 | 0.557 | 5.64 | 1.3 | -- | -1.39 | -- | 1.3 | 0.276 | -- | 20.1 | 1129 | -- | -- |
| 192.31 | 0.65 | 5.74 | 0.494 | 0.213 | -- | 0.0408 | -- | -0.105 | 9.18 | -- | -- | -- | -- |
| 192.32 | 0.649 | 5.74 | 0.496 | 0.213 | -- | -- | -- | -0.105 | 9.16 | -- | -- | -- | -- |
| 144.08 | 0.559 | 5.67 | 1.13 | -- | -1.43 | -- | -- | 0.249 | -- | 20.1 | 1997 | -- | -- |
| 160.61 | 0.59 | 5.71 | -- | 0.403 | -1.4 | -- | -- | 0.0557 | 16.6 | 20.2 | 435 | -- | -- |
| 194.95 | 0.652 | 5.74 | 0.495 | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
| 198.79 | 0.66 | 5.75 | -- | 0.214 | -- | -- | -- | -0.16 | 8.98 | -- | -- | -- | -- |
| 164.71 | 0.598 | 5.72 | -- | -- | -1.17 | -- | -- | 0.0171 | -- | 19.8 | 707 | -- | -- |
| 201.41 | 0.662 | 5.75 | -- | -- | -- | -- | -- | -0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 132.02 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 2 | 132.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 64 | 137.22 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 5 |
| 81 | 137.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 11 |
| 97 | 137.82 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 13 |
| 113 | 137.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 123 | 138.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 136 | 138.24 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 138 | 138.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 150 | 138.33 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 165 | 138.47 | temperature | 25 | 4320 | > th | dose dependent | sin | 5 | NA |
| 189 | 138.66 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 216 | 138.87 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 223 | 138.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 272 | 139.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 313 | 139.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 382 | 139.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 434 | 140.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 450 | 140.24 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 468 | 140.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 517 | 140.49 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 533 | 140.58 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 535 | 140.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 577 | 140.77 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 592 | 140.81 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 636 | 140.95 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 646 | 140.98 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 652 | 140.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 676 | 141.06 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 690 | 141.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 856 | 141.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |