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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0429300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.44 (0.0327) R2 : 0.498
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.66 (0.0785) R2dC : 0.495 R2C : 0.492
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.151 (0.0687) R2dN8 : 0.00686 R2N8 : 0.00345
σ : 0.616
deviance : 173.5
__
_____
C
peak time of C : 22.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
142.3 0.56 4.38 -0.142 1.51 -0.912 0.305 2.87 0.333 22.1 20.58 8 -- --
148.94 0.573 4.44 -0.661 1.53 -0.7 -0.3 -- 0.18 22.2 20.74 36 -- --
142.6 0.556 4.38 -0.197 1.51 -0.901 -- 2.62 0.318 22.1 20.6 7 -- --
149.16 0.569 4.44 -0.631 1.53 -0.719 -- -- 0.182 22.2 20.02 7 -- --
268.11 0.763 4.3 0.0792 -- -1.67 -- 3.24 0.467 -- 20.32 5 -- --
156.55 0.587 4.46 -0.805 1.67 -- -0.305 -- 0.0616 22.7 -- -- -- --
156.94 0.587 4.46 -0.793 1.67 -- -- -- 0.0627 22.7 -- -- -- --
276.8 0.775 4.36 -0.437 -- -1.6 -- -- 0.323 -- 17.9 3 -- --
159.16 0.588 4.41 -- 1.5 -0.948 -- -- 0.291 21.9 19.9 8 -- --
328.73 0.847 4.42 -0.76 -- -- -- -- 0.072 -- -- -- -- --
173.5 0.616 4.44 -- 1.66 -- -- -- 0.151 22.7 -- -- -- --
281.55 0.781 4.35 -- -- -1.75 -- -- 0.387 -- 17.47 3 -- --
343.98 0.866 4.4 -- -- -- -- -- 0.156 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 137.70 temperature 20.0 10 > th dose dependent rect. 11 23
3 139.97 temperature 20.0 10 > th dose dependent rect. 5 22
4 140.22 radiation 1.0 720 < th dose dependent rect. 17 2
6 140.39 temperature 20.0 10 > th dose dependent rect. 15 23
7 140.44 radiation 1.0 720 < th dose independent rect. 17 2
10 140.68 temperature 25.0 30 < th dose independent rect. 3 23
15 141.29 precipitation 0.1 14400 > th dose dependent rect. 5 2
16 141.32 precipitation 0.1 14400 > th dose independent rect. 5 2
20 141.42 precipitation 0.1 14400 < th dose independent rect. 5 2
21 141.42 precipitation 0.1 14400 < th dose dependent rect. 5 2
24 141.47 temperature 20.0 10 > th dose dependent rect. 20 23
26 141.49 temperature 20.0 30 > th dose dependent rect. 2 23
28 141.52 atmosphere 1010.0 4320 < th dose independent rect. 9 1
33 141.67 temperature 20.0 30 > th dose dependent rect. 11 21
36 141.73 radiation 1.0 30 < th dose dependent rect. 3 23
37 141.77 wind 9.0 14400 > th dose independent rect. 19 20
39 141.83 wind 9.0 14400 < th dose independent rect. 20 19
45 141.89 atmosphere 1010.0 4320 > th dose independent rect. 9 1
47 141.94 wind 9.0 14400 > th dose dependent rect. 20 19
51 141.99 atmosphere 1010.0 4320 < th dose independent rect. 5 5
58 142.05 wind 7.0 14400 > th dose independent rect. 11 2
59 142.06 atmosphere 1010.0 4320 < th dose independent rect. 7 4
61 142.06 wind 7.0 14400 > th dose dependent rect. 1 15
63 142.07 atmosphere 1010.0 4320 < th dose independent rect. 5 3
71 142.10 wind 7.0 14400 > th dose dependent rect. 5 10
74 142.13 precipitation 0.1 14400 > th dose independent rect. 3 5
75 142.13 precipitation 0.1 14400 < th dose independent rect. 3 5
77 142.13 temperature 25.0 90 > th dose independent rect. 11 21
78 142.13 precipitation 0.1 14400 < th dose dependent rect. 3 5
83 142.16 humidity 50.0 14400 < th dose independent rect. 9 5
87 142.17 radiation 1.0 720 > th dose independent rect. 11 20
88 142.18 precipitation 0.1 14400 > th dose dependent rect. 3 5
92 142.22 atmosphere 1010.0 4320 < th dose independent rect. 7 1
97 142.25 wind 7.0 14400 < th dose independent rect. 11 2
111 142.25 temperature 25.0 270 > th dose independent rect. 13 18
115 142.25 wind 7.0 14400 > th dose dependent sin 2 NA
120 142.27 humidity 50.0 14400 < th dose dependent rect. 10 1
135 142.32 humidity 50.0 14400 < th dose independent rect. 10 2
138 142.33 humidity 50.0 14400 < th dose independent sin 8 NA
139 142.33 humidity 50.0 14400 > th dose independent rect. 10 1
151 142.37 temperature 20.0 10 > th dose dependent rect. 22 21
166 142.41 temperature 20.0 10 > th dose dependent rect. 22 23
167 142.42 radiation 1.0 720 < th dose dependent rect. 23 20
169 142.43 humidity 50.0 14400 < th dose independent rect. 13 1
216 142.48 temperature 25.0 270 < th dose independent rect. 15 12
229 142.53 temperature 25.0 270 < th dose independent rect. 13 15
230 142.53 temperature 20.0 10 > th dose dependent no NA NA
234 142.54 humidity 50.0 14400 > th dose independent rect. 10 3
262 142.57 humidity 50.0 14400 > th dose independent rect. 7 6
267 142.58 humidity 50.0 14400 > th dose independent rect. 23 14
275 142.59 humidity 50.0 14400 > th dose independent rect. 3 10
280 142.59 temperature 25.0 30 > th dose independent rect. 11 23
303 142.63 atmosphere 1010.0 4320 > th dose independent rect. 5 6
323 142.64 wind 9.0 14400 > th dose independent rect. 13 23
354 142.70 wind 9.0 14400 < th dose independent rect. 24 21
359 142.71 wind 9.0 14400 < th dose independent rect. 3 12
362 142.72 humidity 50.0 14400 > th dose independent sin 7 NA
363 142.72 wind 9.0 14400 < th dose independent rect. 5 16
368 142.73 humidity 50.0 14400 < th dose dependent rect. 13 2
369 142.73 wind 7.0 14400 > th dose dependent rect. 10 10
374 142.74 wind 9.0 14400 < th dose independent rect. 3 18
382 142.75 wind 9.0 14400 < th dose independent rect. 7 14
390 142.76 radiation 1.0 90 > th dose independent rect. 4 14
405 142.77 radiation 1.0 720 < th dose independent rect. 23 20
411 142.78 radiation 1.0 30 < th dose dependent rect. 1 23
417 142.79 wind 9.0 14400 > th dose independent rect. 24 21
419 142.79 wind 7.0 14400 > th dose dependent rect. 7 13
426 142.80 wind 9.0 14400 < th dose independent rect. 10 11
429 142.80 wind 9.0 14400 > th dose independent rect. 22 23
444 142.82 wind 9.0 14400 < th dose independent sin 5 NA
446 142.82 wind 9.0 14400 < th dose independent rect. 13 8
472 142.84 atmosphere 1010.0 4320 > th dose independent rect. 6 1
502 142.84 wind 9.0 14400 > th dose independent rect. 5 16
506 142.84 wind 9.0 14400 > th dose independent rect. 11 17
515 142.84 wind 9.0 14400 > th dose independent rect. 11 23
516 142.84 wind 5.0 14400 > th dose dependent rect. 11 1
520 142.85 atmosphere 1010.0 4320 < th dose independent sin 4 NA
528 142.85 wind 9.0 14400 > th dose independent rect. 5 23
529 142.85 wind 9.0 14400 < th dose independent rect. 5 23
533 142.86 wind 9.0 14400 > th dose independent rect. 13 8
534 142.86 wind 9.0 14400 > th dose independent rect. 11 14
537 142.86 wind 9.0 14400 > th dose independent rect. 3 18
540 142.86 wind 9.0 14400 > th dose independent rect. 5 20
541 142.86 wind 9.0 14400 > th dose independent rect. 11 21
542 142.86 wind 9.0 14400 < th dose independent rect. 7 21
555 142.87 atmosphere 1010.0 4320 > th dose independent rect. 4 10
556 142.87 wind 9.0 14400 < th dose independent rect. 11 17
558 142.87 wind 9.0 14400 > th dose independent rect. 5 18
559 142.87 wind 9.0 14400 > th dose independent rect. 11 19
567 142.87 wind 9.0 14400 < th dose independent rect. 13 23
576 142.88 wind 7.0 14400 > th dose independent rect. 5 10
583 142.88 wind 9.0 14400 > th dose independent rect. 9 19
591 142.88 wind 9.0 14400 > th dose dependent rect. 13 10
599 142.89 wind 9.0 14400 < th dose independent rect. 5 10
601 142.89 wind 9.0 14400 > th dose independent rect. 9 12
602 142.89 wind 9.0 14400 > th dose independent rect. 11 12
608 142.89 wind 9.0 14400 > th dose independent rect. 9 16
619 142.89 wind 9.0 14400 > th dose dependent rect. 13 8
645 142.90 wind 9.0 14400 < th dose independent rect. 11 22
650 142.91 wind 9.0 14400 > th dose independent no NA NA
651 142.91 wind 9.0 14400 < th dose independent sin 21 NA
662 142.91 wind 9.0 14400 < th dose independent rect. 11 15
666 142.91 wind 9.0 14400 > th dose independent rect. 9 22
702 142.93 wind 9.0 14400 > th dose independent rect. 11 10
720 142.93 wind 9.0 14400 < th dose independent rect. 3 23
721 142.93 atmosphere 1005.0 4320 > th dose dependent rect. 8 1
750 142.95 temperature 25.0 720 > th dose independent rect. 15 9
764 142.96 wind 9.0 14400 < th dose independent no NA NA
788 142.97 temperature 25.0 720 > th dose independent rect. 13 11
825 142.99 wind 9.0 14400 > th dose independent rect. 13 15
833 142.99 atmosphere 1005.0 4320 > th dose dependent rect. 8 3
834 142.99 temperature 20.0 10 > th dose dependent rect. 24 23
836 143.00 temperature 25.0 720 < th dose independent rect. 16 6
841 143.00 wind 9.0 14400 > th dose independent rect. 13 13
863 143.02 temperature 25.0 90 > th dose independent rect. 15 17
882 143.03 atmosphere 1010.0 4320 > th dose dependent rect. 6 3
884 143.03 humidity 50.0 14400 < th dose dependent rect. 13 22
891 143.04 wind 9.0 14400 > th dose independent rect. 13 18
901 143.04 wind 9.0 14400 > th dose dependent rect. 13 23
902 143.04 temperature 20.0 10 > th dose dependent rect. 9 23
923 143.06 atmosphere 1010.0 4320 > th dose dependent rect. 6 5
935 143.07 wind 9.0 14400 > th dose dependent rect. 13 17
942 143.08 wind 9.0 14400 < th dose independent rect. 7 8
959 143.10 wind 9.0 14400 > th dose independent sin 20 NA
978 143.11 atmosphere 1010.0 4320 > th dose dependent rect. 6 7
982 143.12 wind 9.0 14400 > th dose independent sin 6 NA
991 143.12 humidity 50.0 14400 < th dose dependent sin 10 NA