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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0427800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycosyl transferase, family 20 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0204) R2 : 0.0138
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.109 (0.0429) R2dN8 : 0.0179 R2N8 : 0.0138
σ : 0.384
deviance : 67.7
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
64.02 0.376 2.9 -0.129 0.0181 -0.302 -0.192 1.52 0.088 8.75 1.197 16 -- --
66.2 0.379 2.89 -0.0572 0.0353 -0.213 -0.189 -- 0.102 8.63 1.078 15 -- --
64.14 0.373 2.9 -0.136 0.018 -0.303 -- 1.51 0.0882 9.61 1.198 16 -- --
66.3 0.379 2.88 -0.0636 0.0329 -0.213 -- -- 0.105 7.57 1.042 15 -- --
64.16 0.373 2.9 -0.136 -- -0.305 -- 1.52 0.0881 -- 1.176 16 -- --
67.13 0.384 2.88 -0.0365 0.0856 -- -0.266 -- 0.102 5.84 -- -- -- --
67.3 0.384 2.88 -0.0386 0.0845 -- -- -- 0.103 5.46 -- -- -- --
66.35 0.379 2.89 -0.0647 -- -0.225 -- -- 0.105 -- 1.032 15 -- --
66.4 0.38 2.88 -- 0.0339 -0.204 -- -- 0.112 7.53 1.054 14 -- --
67.67 0.384 2.89 -0.0358 -- -- -- -- 0.105 -- -- -- -- --
67.34 0.384 2.88 -- 0.0839 -- -- -- 0.107 5.48 -- -- -- --
66.46 0.38 2.88 -- -- -0.216 -- -- 0.112 -- 1.027 14 -- --
67.7 0.384 2.88 -- -- -- -- -- 0.109 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.88 atmosphere 1005.0 30 > th dose dependent rect. 24 1
3 62.16 atmosphere 1005.0 30 > th dose independent rect. 24 1
5 62.23 wind 1.0 30 > th dose independent rect. 24 1
6 62.25 temperature 10.0 1440 > th dose independent rect. 1 1
9 62.25 temperature 30.0 1440 < th dose independent rect. 1 1
13 62.25 humidity 50.0 1440 > th dose independent rect. 1 1
23 62.25 atmosphere 995.0 1440 > th dose independent rect. 1 1
24 62.25 radiation 1.0 1440 < th dose independent rect. 1 1
44 62.25 temperature 10.0 1440 > th dose independent rect. 2 23
47 62.25 radiation 1.0 1440 < th dose dependent rect. 1 1
52 62.32 humidity 90.0 30 < th dose independent rect. 24 1
53 62.37 temperature 25.0 30 > th dose independent rect. 24 1
55 62.42 wind 5.0 10 > th dose independent rect. 10 1
59 62.42 wind 5.0 10 > th dose dependent rect. 10 1
63 62.43 wind 3.0 30 < th dose independent rect. 24 1
65 62.44 wind 7.0 90 > th dose dependent rect. 8 1
66 62.44 temperature 25.0 30 > th dose dependent rect. 24 1
67 62.46 humidity 90.0 30 < th dose dependent rect. 24 1
68 62.47 humidity 80.0 30 > th dose independent rect. 24 1
69 62.47 temperature 10.0 30 > th dose dependent rect. 24 1
88 62.49 wind 7.0 30 < th dose independent rect. 24 1
90 62.49 temperature 10.0 30 > th dose independent rect. 24 1
92 62.49 temperature 30.0 30 < th dose independent rect. 24 1
93 62.49 humidity 50.0 30 > th dose independent rect. 24 1
97 62.49 radiation 1.0 30 < th dose independent rect. 24 1
102 62.49 precipitation 0.1 30 < th dose independent rect. 24 1
103 62.49 temperature 10.0 30 > th dose independent rect. 1 23
104 62.49 radiation 1.0 30 < th dose dependent rect. 24 1
109 62.49 precipitation 0.1 30 < th dose dependent rect. 24 1
112 62.51 wind 9.0 14400 < th dose independent rect. 1 1
118 62.56 humidity 90.0 90 > th dose independent rect. 8 1
120 62.58 wind 9.0 30 < th dose dependent rect. 24 1
122 62.64 humidity 50.0 30 > th dose dependent rect. 24 1
123 62.66 humidity 90.0 90 > th dose dependent rect. 8 1
126 62.71 wind 9.0 30 < th dose independent rect. 1 23
131 62.77 wind 1.0 30 > th dose dependent rect. 24 1
139 62.87 atmosphere 1010.0 30 < th dose independent rect. 24 1
145 63.01 wind 9.0 90 > th dose dependent rect. 22 12
154 63.04 radiation 30.0 30 > th dose dependent rect. 14 20
165 63.17 temperature 30.0 30 < th dose dependent rect. 24 1
169 63.31 humidity 60.0 1440 > th dose independent rect. 4 5
172 63.33 humidity 60.0 1440 > th dose independent rect. 7 2
176 63.37 radiation 20.0 30 > th dose independent rect. 9 1
184 63.43 atmosphere 1015.0 30 < th dose dependent rect. 24 1
191 63.53 humidity 60.0 1440 > th dose independent rect. 21 12
194 63.54 humidity 60.0 1440 < th dose independent rect. 8 1
228 63.58 temperature 20.0 30 > th dose dependent rect. 2 1
229 63.59 humidity 60.0 30 < th dose independent rect. 18 16
231 63.59 humidity 60.0 30 < th dose dependent rect. 18 16
233 63.60 humidity 60.0 270 < th dose independent rect. 8 1
261 63.60 humidity 60.0 270 < th dose dependent rect. 8 1
263 63.60 atmosphere 1005.0 30 > th dose dependent rect. 2 1
288 63.61 temperature 20.0 30 > th dose independent rect. 2 1
289 63.61 atmosphere 1005.0 30 > th dose independent rect. 2 1
290 63.61 humidity 60.0 30 < th dose independent rect. 16 18
309 63.61 humidity 60.0 30 < th dose dependent rect. 16 18
315 63.62 wind 3.0 30 < th dose dependent rect. 2 1
333 63.63 wind 3.0 30 < th dose independent rect. 2 1
335 63.63 humidity 60.0 10 < th dose independent rect. 9 1
418 63.63 wind 1.0 10 < th dose dependent rect. 9 1
419 63.63 humidity 60.0 10 < th dose dependent rect. 9 1
511 63.64 humidity 80.0 30 > th dose independent rect. 2 1
539 63.65 humidity 50.0 30 > th dose dependent rect. 2 1
545 63.66 wind 1.0 10 < th dose independent rect. 9 1
546 63.66 temperature 10.0 30 > th dose independent rect. 2 1
548 63.66 temperature 30.0 30 < th dose independent rect. 2 1
549 63.66 humidity 50.0 30 > th dose independent rect. 2 1
554 63.66 atmosphere 1010.0 30 < th dose independent rect. 2 1
556 63.66 radiation 1.0 30 < th dose independent rect. 2 1
561 63.66 precipitation 0.1 30 < th dose independent rect. 2 1
564 63.66 temperature 10.0 30 > th dose independent rect. 3 23
565 63.66 radiation 1.0 30 < th dose dependent rect. 2 1
570 63.66 precipitation 0.1 30 < th dose dependent rect. 2 1
573 63.67 humidity 60.0 1440 > th dose independent rect. 24 9
586 63.69 humidity 60.0 1440 > th dose independent rect. 2 7
647 63.72 radiation 30.0 30 > th dose dependent sin 12 NA
656 63.73 atmosphere 1015.0 30 < th dose dependent rect. 2 1
658 63.74 wind 9.0 1440 < th dose independent rect. 3 1
659 63.74 temperature 10.0 1440 > th dose independent rect. 3 1
662 63.74 temperature 30.0 1440 < th dose independent rect. 3 1
666 63.74 humidity 50.0 1440 > th dose independent rect. 3 1
675 63.74 atmosphere 995.0 1440 > th dose independent rect. 3 1
676 63.74 radiation 1.0 1440 < th dose independent rect. 3 1
697 63.74 temperature 10.0 1440 > th dose independent rect. 4 23
700 63.74 radiation 1.0 1440 < th dose dependent rect. 3 1
717 63.75 radiation 40.0 30 > th dose dependent rect. 9 1
841 63.79 temperature 30.0 30 < th dose dependent rect. 2 1
860 63.83 wind 1.0 30 > th dose independent rect. 2 1
873 63.85 wind 1.0 10 > th dose independent rect. 15 23
887 63.89 radiation 10.0 30 > th dose dependent rect. 9 1
924 63.96 radiation 30.0 30 > th dose independent rect. 14 21
948 64.01 atmosphere 995.0 30 > th dose independent rect. 3 23