Os09g0426800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glossy1 protein.
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Os09g0426800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glossy1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 170.44 | 0.613 | 9.4 | -2.73 | 1.59 | 1.13 | 0.128 | 2.53 | -0.589 | 6.59 | 20.16 | 4307 | -- | -- |
| 176.93 | 0.62 | 9.43 | -3.02 | 1.6 | 1.26 | 0.252 | -- | -0.656 | 6.43 | 20.38 | 4334 | -- | -- |
| 170.47 | 0.608 | 9.4 | -2.73 | 1.59 | 1.13 | -- | 2.53 | -0.589 | 6.61 | 20.17 | 4306 | -- | -- |
| 176.8 | 0.619 | 9.42 | -3.01 | 1.59 | 1.28 | -- | -- | -0.669 | 6.58 | 20.36 | 4322 | -- | -- |
| 301.42 | 0.809 | 9.41 | -2.53 | -- | 1.11 | -- | 2.79 | -0.603 | -- | 20.84 | 5754 | -- | -- |
| 215.29 | 0.688 | 9.38 | -2.92 | 1.61 | -- | 0.262 | -- | -0.479 | 6.44 | -- | -- | -- | -- |
| 215.45 | 0.687 | 9.38 | -2.92 | 1.61 | -- | -- | -- | -0.48 | 6.48 | -- | -- | -- | -- |
| 309.69 | 0.82 | 9.42 | -2.98 | -- | 1.35 | -- | -- | -0.654 | -- | 20.16 | 4334 | -- | -- |
| 373.07 | 0.9 | 9.35 | -- | 1.44 | 1.53 | -- | -- | -0.374 | 6.6 | 39.99 | 5789 | -- | -- |
| 350.51 | 0.875 | 9.41 | -2.88 | -- | -- | -- | -- | -0.446 | -- | -- | -- | -- | -- |
| 439.69 | 0.981 | 9.31 | -- | 1.57 | -- | -- | -- | -0.155 | 6.58 | -- | -- | -- | -- |
| 458.18 | 0.997 | 9.37 | -- | -- | 1.66 | -- | -- | -0.461 | -- | 49.83 | 17273 | -- | -- |
| 568.74 | 1.11 | 9.34 | -- | -- | -- | -- | -- | -0.127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 160.73 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 10 | 160.91 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 15 | 160.97 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 30 | 162.09 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 79 | 163.18 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 99 | 163.57 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 132 | 164.08 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 10 | 18 |
| 154 | 164.39 | humidity | 50 | 270 | > th | dose dependent | rect. | 11 | 17 |
| 175 | 164.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 177 | 164.64 | temperature | 30 | 14400 | > th | dose dependent | sin | 8 | NA |
| 194 | 164.86 | temperature | 30 | 14400 | > th | dose independent | sin | 8 | NA |
| 200 | 165.01 | temperature | 30 | 14400 | < th | dose independent | sin | 8 | NA |
| 228 | 165.41 | radiation | 20 | 4320 | > th | dose independent | rect. | 15 | 19 |
| 246 | 165.60 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 19 |
| 319 | 166.42 | radiation | 20 | 4320 | > th | dose independent | sin | 12 | NA |
| 388 | 166.92 | humidity | 80 | 14400 | < th | dose dependent | rect. | 19 | 3 |
| 397 | 166.94 | radiation | 10 | 4320 | > th | dose dependent | rect. | 14 | 20 |
| 406 | 166.98 | radiation | 20 | 4320 | < th | dose independent | sin | 12 | NA |
| 411 | 167.06 | temperature | 25 | 30 | < th | dose independent | rect. | 13 | 17 |
| 501 | 167.57 | humidity | 60 | 10 | > th | dose dependent | rect. | 12 | 18 |
| 551 | 167.76 | radiation | 20 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 556 | 167.77 | radiation | 30 | 4320 | < th | dose dependent | rect. | 15 | 19 |
| 557 | 167.78 | humidity | 80 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 563 | 167.82 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 22 |
| 604 | 167.99 | radiation | 40 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 615 | 168.05 | radiation | 30 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 647 | 168.15 | radiation | 10 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 651 | 168.17 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |
| 786 | 168.26 | radiation | 20 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 797 | 168.29 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 930 | 168.32 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 956 | 168.32 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 21 |
| 999 | 168.34 | temperature | 30 | 4320 | < th | dose independent | rect. | 12 | 2 |