Os09g0426500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0426500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 584.84 | 1.14 | 5.83 | -3.13 | 5.72 | 2.67 | -6.17 | 2.33 | -0.804 | 9.81 | 94.74 | 976 | 18.3 | 2.77 |
| 596.83 | 1.14 | 5.83 | -3.19 | 5.72 | 2.79 | -6.55 | -- | -0.792 | 9.84 | 95.23 | 973 | 18.2 | 2.82 |
| 710.31 | 1.24 | 5.84 | -3.13 | 6.1 | 3 | -- | 4.81 | -0.718 | 9.95 | 100.1 | 925 | 17.6 | 3.74 |
| 742.27 | 1.27 | 5.85 | -3.48 | 5.95 | 3.39 | -- | -- | -0.913 | 10.3 | 101.5 | 942 | 17.3 | 5.38 |
| 790.26 | 1.31 | 6.04 | -3.62 | -- | 7.36 | -- | -3.19 | -0.968 | -- | 134.8 | 583 | 1.05 | 6.02 |
| 800.9 | 1.33 | 5.82 | -3.61 | 6.05 | -- | -6.4 | -- | -0.829 | 8.83 | -- | -- | -- | -- |
| 938.62 | 1.43 | 5.82 | -3.83 | 6.07 | -- | -- | -- | -0.833 | 8.79 | -- | -- | -- | -- |
| 865.57 | 1.37 | 6.01 | -3.76 | -- | 7.03 | -- | -- | -0.951 | -- | 144.3 | 581 | 1.02 | 5.95 |
| 1074.54 | 1.53 | 5.82 | -- | 5.86 | 3.64 | -- | -- | -0.522 | 10.5 | 98.7 | 933 | 17.9 | 4.95 |
| 3033.91 | 2.57 | 5.98 | -3.82 | -- | -- | -- | -- | -0.787 | -- | -- | -- | -- | -- |
| 1324.42 | 1.7 | 5.72 | -- | 6.06 | -- | -- | -- | -0.407 | 8.84 | -- | -- | -- | -- |
| 1121.46 | 1.56 | 5.92 | -- | -- | 7.73 | -- | -- | -0.71 | -- | 146 | 1140 | 16.8 | 14.1 |
| 3418.7 | 2.73 | 5.88 | -- | -- | -- | -- | -- | -0.363 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 655.93 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 3 | 658.32 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 8 | 666.28 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 20 |
| 11 | 667.16 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 13 | 667.60 | humidity | 70 | 1440 | < th | dose independent | sin | 15 | NA |
| 25 | 669.14 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 68 | 670.70 | humidity | 70 | 1440 | > th | dose independent | sin | 15 | NA |
| 77 | 671.53 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 2 |
| 80 | 671.66 | humidity | 50 | 1440 | > th | dose dependent | sin | 16 | NA |
| 100 | 671.95 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 11 |
| 107 | 672.22 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 120 | 672.79 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 7 |
| 127 | 672.90 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 16 |
| 129 | 672.92 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 182 | 673.90 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 185 | 673.95 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 193 | 674.29 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 199 | 674.39 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 201 | 674.44 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 228 | 674.84 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 238 | 674.98 | humidity | 80 | 1440 | < th | dose dependent | sin | 13 | NA |
| 301 | 676.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 4 | 18 |
| 303 | 676.48 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 340 | 676.91 | humidity | 50 | 1440 | > th | dose dependent | rect. | 2 | 22 |
| 427 | 678.13 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 460 | 678.42 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 468 | 678.62 | humidity | 90 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 474 | 678.68 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 488 | 678.83 | humidity | 50 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 523 | 679.29 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 588 | 679.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 1 | 18 |
| 595 | 680.05 | humidity | 50 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 600 | 680.09 | humidity | 50 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 601 | 680.12 | humidity | 80 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 604 | 680.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 630 | 680.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 641 | 680.38 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 649 | 680.44 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 687 | 680.60 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 699 | 680.67 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 709 | 680.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 16 |
| 726 | 680.84 | humidity | 50 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 734 | 680.91 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 772 | 681.24 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 18 |
| 774 | 681.26 | radiation | 1 | 1440 | < th | dose independent | sin | 1 | NA |
| 798 | 681.46 | radiation | 1 | 1440 | < th | dose dependent | sin | 1 | NA |
| 840 | 681.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 918 | 682.32 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 20 |
| 984 | 682.95 | radiation | 10 | 1440 | < th | dose dependent | sin | 14 | NA |