Os09g0425500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os09g0425500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 339.44 | 0.866 | 5.27 | 1.87 | 0.517 | -1.91 | -0.625 | -0.523 | 0.553 | 23.9 | 22.97 | 818 | -- | -- |
| 339.57 | 0.858 | 5.26 | 1.98 | 0.519 | -1.97 | -0.677 | -- | 0.584 | 23.7 | 23 | 806 | -- | -- |
| 340.97 | 0.86 | 5.28 | 1.83 | 0.512 | -1.94 | -- | -0.849 | 0.552 | 23.4 | 22.9 | 791 | -- | -- |
| 341.55 | 0.861 | 5.26 | 2.01 | 0.527 | -2.01 | -- | -- | 0.591 | 23.3 | 23 | 793 | -- | -- |
| 354.26 | 0.877 | 5.3 | 1.55 | -- | -1.59 | -- | -1.82 | 0.453 | -- | 22.43 | 723 | -- | -- |
| 431.99 | 0.974 | 5.31 | 1.49 | 0.401 | -- | -0.32 | -- | 0.283 | 4.72 | -- | -- | -- | -- |
| 432.08 | 0.973 | 5.31 | 1.5 | 0.405 | -- | -- | -- | 0.284 | 5.23 | -- | -- | -- | -- |
| 356.03 | 0.879 | 5.26 | 1.94 | -- | -1.73 | -- | -- | 0.558 | -- | 22.8 | 740 | -- | -- |
| 440.41 | 0.977 | 5.34 | -- | 0.433 | -1.43 | -- | -- | 0.262 | 0.347 | 24.21 | 789 | -- | -- |
| 440.68 | 0.981 | 5.31 | 1.51 | -- | -- | -- | -- | 0.295 | -- | -- | -- | -- | -- |
| 491.13 | 1.04 | 5.35 | -- | 0.431 | -- | -- | -- | 0.118 | 5.1 | -- | -- | -- | -- |
| 446.14 | 0.984 | 5.38 | -- | -- | -1.43 | -- | -- | 0.0194 | -- | 28.46 | 763 | -- | -- |
| 500.9 | 1.04 | 5.35 | -- | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 335.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 61 | 339.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 103 | 340.96 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 21 |
| 127 | 341.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 2 |
| 152 | 342.56 | temperature | 20 | 720 | > th | dose dependent | sin | 20 | NA |
| 208 | 343.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 13 |
| 363 | 345.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 422 | 346.35 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 427 | 346.37 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 726 | 348.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 13 |
| 751 | 348.39 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 4 |
| 763 | 348.46 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 770 | 348.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 22 |
| 902 | 349.07 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 6 |