Os09g0423500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os09g0423500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172.56 | 0.617 | 7.46 | -0.152 | 4.48 | 2.42 | -1.47 | 1.55 | -0.325 | 21.8 | 19.4 | 348 | 0.375 | -- |
| 172.11 | 0.611 | 7.48 | -0.278 | 4.19 | 2.3 | -1.81 | -- | -0.406 | 21.7 | 20.87 | 395 | 0.977 | -- |
| 175.26 | 0.617 | 7.45 | 0.119 | 4.96 | 2.83 | -- | 3.79 | -0.259 | 21.7 | 17.17 | 314 | 0.0107 | -- |
| 185.3 | 0.634 | 7.49 | -0.351 | 4.23 | 2.3 | -- | -- | -0.441 | 21.7 | 20.95 | 402 | 1.2 | -- |
| 731.39 | 1.26 | 7.27 | 0.0697 | -- | 2.28 | -- | 2.59 | -0.165 | -- | 24.65 | 1002 | 0.00212 | -- |
| 259.79 | 0.756 | 7.36 | 0.0337 | 3.36 | -- | -2.26 | -- | 0.03 | 21.7 | -- | -- | -- | -- |
| 279.19 | 0.782 | 7.36 | 0.119 | 3.37 | -- | -- | -- | 0.0335 | 21.7 | -- | -- | -- | -- |
| 724.82 | 1.25 | 7.37 | -0.51 | -- | 2.59 | -- | -- | -0.389 | -- | 24.5 | 1018 | 1.85e-05 | -- |
| 188.31 | 0.639 | 7.48 | -- | 4.2 | 2.22 | -- | -- | -0.392 | 21.7 | 21 | 396 | 1.2 | -- |
| 953.02 | 1.44 | 7.27 | 0.15 | -- | -- | -- | -- | 0.0292 | -- | -- | -- | -- | -- |
| 279.56 | 0.782 | 7.36 | -- | 3.37 | -- | -- | -- | 0.0203 | 21.7 | -- | -- | -- | -- |
| 732.81 | 1.26 | 7.36 | -- | -- | 2.55 | -- | -- | -0.306 | -- | 24.5 | 1009 | 3.42e-07 | -- |
| 953.61 | 1.44 | 7.27 | -- | -- | -- | -- | -- | 0.0125 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 174.51 | temperature | 20 | 270 | > th | dose dependent | sin | 6 | NA |
| 4 | 175.71 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 17 | 179.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 24 | 180.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 33 | 181.59 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 65 | 183.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 76 | 184.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 80 | 184.78 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 86 | 185.08 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 142 | 187.81 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 157 | 188.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 170 | 189.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 172 | 189.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 207 | 190.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 17 |
| 216 | 190.40 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 217 | 190.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 248 | 190.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 251 | 190.92 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 252 | 190.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 254 | 190.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 272 | 191.22 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 288 | 191.45 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 328 | 191.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 12 |
| 337 | 192.03 | temperature | 30 | 1440 | < th | dose dependent | sin | 19 | NA |
| 367 | 192.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 406 | 192.50 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 533 | 193.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 19 |
| 564 | 193.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 572 | 193.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 22 |
| 581 | 193.62 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 650 | 193.86 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 672 | 193.92 | temperature | 25 | 1440 | < th | dose independent | rect. | 1 | 20 |
| 694 | 194.00 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 743 | 194.13 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 9 |
| 744 | 194.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 18 |
| 759 | 194.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 16 |
| 892 | 194.52 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 910 | 194.58 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |