Os09g0423300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os09g0423300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.78 | 0.392 | 11.2 | -0.288 | 1.27 | 0.904 | -1.34 | -0.0223 | -0.78 | 18.8 | 18.5 | 2584 | -- | -- |
| 69.52 | 0.388 | 11.2 | -0.288 | 1.26 | 0.945 | -1.31 | -- | -0.781 | 18.8 | 18.38 | 2668 | -- | -- |
| 73.79 | 0.4 | 11.2 | -0.234 | 1.25 | 0.889 | -- | -0.292 | -0.779 | 18.8 | 18.36 | 2684 | -- | -- |
| 73.86 | 0.4 | 11.2 | -0.25 | 1.26 | 0.977 | -- | -- | -0.777 | 18.8 | 18.37 | 2748 | -- | -- |
| 156.53 | 0.583 | 11.2 | -0.228 | -- | 0.995 | -- | -0.135 | -0.74 | -- | 18.4 | 2768 | -- | -- |
| 81.28 | 0.423 | 11.3 | -0.703 | 1.3 | -- | -1.38 | -- | -0.942 | 18.6 | -- | -- | -- | -- |
| 86.1 | 0.435 | 11.3 | -0.682 | 1.29 | -- | -- | -- | -0.946 | 18.7 | -- | -- | -- | -- |
| 155.26 | 0.58 | 11.2 | -0.254 | -- | 1.22 | -- | -- | -0.747 | -- | 17.9 | 2771 | -- | -- |
| 75.04 | 0.403 | 11.2 | -- | 1.26 | 1.13 | -- | -- | -0.723 | 18.8 | 18.3 | 2748 | -- | -- |
| 173.31 | 0.615 | 11.3 | -0.712 | -- | -- | -- | -- | -0.972 | -- | -- | -- | -- | -- |
| 98.34 | 0.464 | 11.3 | -- | 1.3 | -- | -- | -- | -0.87 | 18.6 | -- | -- | -- | -- |
| 156.17 | 0.582 | 11.2 | -- | -- | 1.45 | -- | -- | -0.737 | -- | 17.9 | 2776 | -- | -- |
| 186.68 | 0.638 | 11.2 | -- | -- | -- | -- | -- | -0.893 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.31 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 7 | 65.11 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 16 | 66.10 | radiation | 1.0 | 90 | < th | dose independent | rect. | 3 | 12 |
| 24 | 66.63 | radiation | 1.0 | 90 | < th | dose independent | rect. | 3 | 7 |
| 33 | 66.72 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 41 | 67.01 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 21 |
| 42 | 67.01 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 21 |
| 58 | 67.26 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 70 | 67.37 | wind | 1.0 | 90 | > th | dose independent | rect. | 6 | 21 |
| 74 | 67.40 | wind | 1.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 81 | 67.52 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 85 | 67.56 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 86 | 67.56 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 88 | 67.56 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 89 | 67.56 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 93 | 67.56 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 95 | 67.56 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 99 | 67.56 | temperature | 10.0 | 90 | > th | dose independent | rect. | 6 | 21 |
| 108 | 67.65 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 116 | 67.72 | radiation | 10.0 | 90 | < th | dose dependent | sin | 3 | NA |
| 128 | 67.87 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 134 | 67.96 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 3 |
| 135 | 67.96 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 143 | 68.03 | wind | 9.0 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 153 | 68.06 | radiation | 1.0 | 90 | < th | dose independent | sin | 1 | NA |
| 154 | 68.06 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 156 | 68.09 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 174 | 68.24 | wind | 9.0 | 90 | < th | dose independent | rect. | 6 | 21 |
| 181 | 68.33 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 187 | 68.36 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 203 | 68.48 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 206 | 68.48 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 210 | 68.48 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 215 | 68.48 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 216 | 68.48 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 217 | 68.48 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 221 | 68.48 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 21 |
| 224 | 68.49 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 227 | 68.52 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 244 | 68.68 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 252 | 68.71 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 19 |
| 258 | 68.73 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 6 | 21 |
| 265 | 68.83 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 267 | 68.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 23 |
| 268 | 68.84 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 269 | 68.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 270 | 68.85 | radiation | 1.0 | 90 | > th | dose independent | sin | 2 | NA |
| 294 | 68.90 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 6 | 21 |
| 308 | 68.99 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 310 | 68.99 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 311 | 68.99 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 315 | 68.99 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 322 | 69.00 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 328 | 69.06 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 10 | 11 |
| 337 | 69.11 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 354 | 69.18 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 372 | 69.29 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 13 |
| 379 | 69.31 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 3 | 4 |
| 401 | 69.36 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 408 | 69.39 | radiation | 10.0 | 10 | < th | dose dependent | sin | 2 | NA |
| 416 | 69.41 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 11 |
| 437 | 69.47 | wind | 9.0 | 10 | < th | dose independent | rect. | 3 | 4 |
| 438 | 69.47 | temperature | 10.0 | 10 | > th | dose independent | rect. | 3 | 4 |
| 440 | 69.47 | temperature | 30.0 | 10 | < th | dose independent | rect. | 3 | 4 |
| 441 | 69.47 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 4 |
| 445 | 69.47 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 3 | 4 |
| 449 | 69.47 | temperature | 10.0 | 10 | > th | dose independent | rect. | 7 | 20 |
| 456 | 69.50 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 459 | 69.53 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 13 |
| 461 | 69.53 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 462 | 69.53 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 13 |
| 465 | 69.55 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 472 | 69.56 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 505 | 69.59 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 536 | 69.64 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 4 |
| 539 | 69.64 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 549 | 69.68 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 557 | 69.70 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 19 |
| 567 | 69.72 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 586 | 69.77 | radiation | 10.0 | 720 | < th | dose independent | rect. | 16 | 14 |
| 621 | 69.89 | humidity | 50.0 | 90 | > th | dose independent | rect. | 6 | 21 |
| 625 | 69.91 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 3 | 19 |
| 702 | 70.12 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 735 | 70.19 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 737 | 70.19 | wind | 9.0 | 90 | < th | dose dependent | rect. | 6 | 21 |
| 777 | 70.24 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 798 | 70.29 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 801 | 70.30 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 4 |
| 805 | 70.31 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 820 | 70.33 | wind | 1.0 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 824 | 70.34 | wind | 1.0 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 844 | 70.35 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 1 |
| 847 | 70.37 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 22 |
| 851 | 70.39 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 855 | 70.39 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 856 | 70.40 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 857 | 70.40 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 859 | 70.40 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 860 | 70.40 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 864 | 70.40 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 872 | 70.40 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 23 |
| 883 | 70.41 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 889 | 70.43 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 905 | 70.46 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 931 | 70.51 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 7 | 20 |
| 936 | 70.52 | temperature | 30.0 | 90 | < th | dose independent | rect. | 6 | 21 |
| 942 | 70.54 | wind | 5.0 | 90 | < th | dose independent | rect. | 21 | 6 |
| 966 | 70.56 | wind | 9.0 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 980 | 70.58 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 2 |
| 984 | 70.58 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 992 | 70.59 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 999 | 70.60 | wind | 1.0 | 14400 | < th | dose independent | rect. | 22 | 9 |