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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0421300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phospholipase D lambda.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.04 (0.0933) R2 : 0.542
β1 : -7.55 (0.633) R2dD : 0.984 R2D : -0.971
β2 : 2.33 (0.177) R2dC : 0.175 R2C : 0.0241
β3 : 6.27 (0.337) R2dE : 0.816 R2E : -0.0612
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -29.1 (2.53) R2dD*E : 0.953 R2D*E : -0.945
γ1 : -0.749 (0.2) R2dN8 : 0.0376 R2N8 : -0.151
σ : 1.26
deviance : 726.75
__
_____
C
peak time of C : 6.16
E
wheather : temperature
threshold : 25.04
memory length : 1980
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 7.63
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
725.79 1.27 7.05 -7.6 2.35 6.26 0.816 -29.5 -0.776 6.12 25.04 1951 7.64 --
1036.29 1.5 6.59 -0.986 1.85 3.21 -0.625 -- 0.702 4.29 25.63 2384 4.5 --
726.75 1.26 7.04 -7.55 2.33 6.27 -- -29.1 -0.749 6.16 25.04 1980 7.63 --
871.91 1.38 6.69 -4.48 1.68 5.47 -- -- -0.84 5.44 7.414 23922 10.9 --
861.19 1.37 7.16 -8.36 -- 5.94 -- -28.2 -0.617 -- 25.22 2543 7.01 --
1250.76 1.66 6.25 -0.0188 2.02 -- 1.26 -- 1.14 4.76 -- -- -- --
1254.87 1.66 6.25 -0.0249 2.03 -- -- -- 1.13 4.71 -- -- -- --
931.82 1.42 6.83 -5.75 -- 7.55 -- -- -1.24 -- -61.22 28121 7.53 --
903.99 1.4 6.48 -- 1.81 3 -- -- 0.113 5.13 24.04 9655 11.9 --
1473.43 1.79 6.27 0.052 -- -- -- -- 1.18 -- -- -- -- --
1254.89 1.66 6.25 -- 2.03 -- -- -- 1.13 4.71 -- -- -- --
977.84 1.46 6.45 -- -- 5.03 -- -- 0.369 -- -77.41 9656 9.52 --
1473.51 1.79 6.27 -- -- -- -- -- 1.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 675.81 humidity 80 43200 > th dose independent rect. 2 1
3 685.71 wind 1 43200 < th dose dependent rect. 1 1
8 692.87 humidity 80 43200 < th dose independent rect. 2 1
10 695.05 humidity 80 43200 < th dose independent rect. 2 3
17 698.21 humidity 80 43200 < th dose independent rect. 4 1
41 707.99 humidity 80 43200 < th dose dependent rect. 21 11
45 710.10 humidity 80 43200 < th dose dependent rect. 22 1
54 715.36 humidity 80 43200 < th dose dependent rect. 3 4
64 718.30 wind 3 43200 < th dose dependent rect. 8 1
87 724.23 humidity 80 43200 < th dose dependent rect. 5 1
94 727.48 wind 3 43200 > th dose independent rect. 9 1
99 728.99 wind 3 43200 < th dose independent rect. 21 1
102 730.45 wind 3 43200 > th dose independent rect. 6 8
107 731.20 wind 3 43200 < th dose independent rect. 8 5
108 731.64 radiation 40 43200 < th dose independent rect. 10 1
110 732.57 wind 3 43200 > th dose independent rect. 8 6
115 733.60 wind 3 43200 < th dose independent rect. 9 1
119 735.03 wind 3 43200 > th dose independent rect. 21 1
122 736.05 radiation 20 43200 < th dose independent rect. 8 1
127 737.48 wind 3 43200 < th dose independent rect. 6 8
155 743.03 wind 9 43200 < th dose independent rect. 8 7
163 744.30 wind 3 43200 > th dose independent rect. 20 3
165 744.67 wind 9 43200 > th dose independent rect. 9 6
174 746.63 wind 3 43200 > th dose independent rect. 20 18
181 747.88 wind 5 43200 < th dose dependent rect. 11 1
182 748.06 wind 7 43200 > th dose dependent rect. 9 7
186 748.93 radiation 40 43200 > th dose independent rect. 10 1
190 749.32 wind 3 43200 < th dose independent rect. 20 18
196 750.37 wind 3 43200 < th dose independent rect. 20 3
199 751.13 wind 9 43200 < th dose dependent rect. 11 2
204 751.77 radiation 40 43200 > th dose dependent rect. 10 2
206 751.83 wind 9 43200 < th dose independent rect. 2 13
216 752.92 wind 3 43200 > th dose independent rect. 11 1
217 752.96 wind 9 43200 < th dose independent rect. 24 15
230 754.06 wind 3 43200 < th dose independent rect. 11 1
231 754.11 wind 9 43200 < th dose independent rect. 5 10
236 754.39 temperature 25 14400 > th dose independent rect. 11 1
244 754.97 wind 1 43200 > th dose dependent rect. 11 2
246 754.98 wind 5 43200 < th dose dependent rect. 20 3
247 755.04 wind 3 43200 < th dose independent rect. 20 14
255 755.40 wind 3 43200 < th dose independent rect. 6 4
259 755.56 radiation 20 43200 < th dose independent rect. 17 17
261 755.73 radiation 20 43200 < th dose independent rect. 6 4
262 755.78 radiation 20 43200 < th dose independent rect. 4 6
264 755.78 radiation 20 43200 < th dose independent rect. 1 9
270 755.87 temperature 25 14400 < th dose independent rect. 11 1
271 755.88 radiation 20 43200 < th dose independent rect. 22 12
279 756.11 radiation 10 43200 > th dose independent rect. 9 1
287 756.71 wind 1 43200 > th dose dependent rect. 6 9
292 757.42 wind 3 43200 > th dose independent rect. 6 4
306 757.71 temperature 25 14400 > th dose independent rect. 11 3
318 758.45 radiation 1 14400 < th dose dependent rect. 1 4
319 758.49 temperature 25 1440 > th dose dependent rect. 16 16
327 758.88 wind 1 43200 < th dose dependent rect. 10 20
328 758.96 wind 9 43200 < th dose dependent rect. 6 9
329 759.03 wind 9 43200 > th dose independent rect. 2 13
337 759.47 wind 3 43200 > th dose independent rect. 20 14
340 759.74 wind 9 43200 > th dose independent rect. 24 15
351 760.49 wind 9 43200 > th dose independent rect. 5 10
358 760.77 temperature 25 1440 > th dose dependent rect. 16 8
362 761.05 wind 1 43200 < th dose independent rect. 24 2
364 761.19 wind 7 43200 > th dose dependent rect. 5 11
368 761.61 temperature 25 1440 > th dose dependent rect. 16 13
369 761.68 temperature 25 1440 > th dose dependent sin 12 NA
385 762.34 temperature 25 1440 > th dose dependent rect. 18 5
401 763.14 wind 3 43200 > th dose dependent rect. 5 12
409 763.50 temperature 25 14400 < th dose independent rect. 10 5
410 763.52 wind 3 43200 > th dose independent sin 4 NA
418 763.85 radiation 40 43200 < th dose independent rect. 16 20
420 763.88 radiation 40 43200 < th dose independent rect. 4 8
423 763.89 radiation 40 43200 < th dose independent rect. 1 11
430 763.98 radiation 40 43200 < th dose independent rect. 7 5
433 764.00 radiation 40 43200 < th dose independent rect. 23 13
440 764.11 temperature 25 14400 > th dose independent rect. 13 1
446 764.62 wind 3 43200 < th dose independent sin 5 NA
456 765.28 wind 1 43200 > th dose dependent rect. 3 13
464 765.74 wind 1 43200 > th dose dependent rect. 8 7
470 765.98 wind 1 43200 < th dose dependent rect. 21 7
480 766.25 wind 1 43200 < th dose dependent rect. 8 22
481 766.35 wind 1 43200 > th dose dependent rect. 9 5
484 766.56 wind 9 43200 < th dose dependent rect. 8 7
485 766.58 wind 5 43200 < th dose dependent rect. 6 8
512 767.70 wind 3 43200 < th dose dependent rect. 6 6
515 767.94 radiation 40 43200 > th dose dependent rect. 7 5
535 768.04 wind 3 43200 > th dose independent rect. 6 1
543 768.26 wind 9 43200 < th dose dependent rect. 9 5
544 768.32 wind 9 43200 < th dose dependent rect. 3 13
568 769.33 wind 7 43200 > th dose dependent rect. 10 4
576 769.83 wind 9 43200 > th dose independent rect. 19 21
581 769.94 wind 7 43200 > th dose dependent rect. 24 16
611 771.00 wind 7 43200 > th dose dependent sin 23 NA
619 771.30 wind 3 43200 < th dose independent rect. 20 11
632 771.72 wind 1 43200 > th dose dependent rect. 24 16
641 771.96 radiation 1 14400 < th dose dependent rect. 21 8
644 771.98 wind 1 43200 < th dose dependent rect. 19 9
645 772.04 wind 9 43200 < th dose independent rect. 19 21
659 772.47 temperature 25 14400 < th dose independent rect. 13 1
703 773.45 wind 9 43200 < th dose dependent rect. 24 16
714 773.70 wind 3 43200 > th dose independent rect. 20 11
718 773.90 wind 1 43200 > th dose dependent sin 2 NA
734 774.24 wind 3 43200 < th dose independent rect. 20 9
738 774.28 wind 9 43200 < th dose dependent rect. 20 20
757 774.70 radiation 20 43200 < th dose independent sin 10 NA
767 774.95 wind 1 43200 > th dose dependent rect. 6 1
772 775.11 temperature 20 14400 < th dose independent rect. 20 2
795 775.75 wind 9 43200 < th dose dependent sin 2 NA
815 776.18 humidity 90 14400 > th dose dependent rect. 15 13
830 776.49 temperature 20 14400 < th dose independent rect. 19 4
836 776.67 wind 3 43200 < th dose independent rect. 6 1
965 778.94 wind 3 43200 > th dose independent rect. 20 9