Os09g0420600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PDZ/DHR/GLGF domain containing protein.
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Os09g0420600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PDZ/DHR/GLGF domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.83 | 0.204 | 10 | -0.159 | 0.366 | -0.883 | -0.407 | 0.102 | -0.0271 | 7.34 | 28.3 | 10 | -- | -- |
| 18.8 | 0.203 | 10 | -0.139 | 0.361 | -0.883 | -0.408 | -- | -0.0192 | 7.36 | 28.3 | 10 | -- | -- |
| 19.17 | 0.205 | 10 | -0.165 | 0.358 | -0.852 | -- | 0.148 | -0.0184 | 7.74 | 28.3 | 10 | -- | -- |
| 19.2 | 0.205 | 10 | -0.141 | 0.359 | -0.856 | -- | -- | -0.0123 | 7.72 | 28.3 | 10 | -- | -- |
| 25.82 | 0.237 | 10 | -0.146 | -- | -0.924 | -- | 0.0177 | -0.0297 | -- | 25.25 | 2 | -- | -- |
| 29.59 | 0.255 | 9.95 | 0.0652 | 0.432 | -- | 0.00614 | -- | 0.167 | 10.3 | -- | -- | -- | -- |
| 29.59 | 0.255 | 9.95 | 0.0655 | 0.432 | -- | -- | -- | 0.167 | 10.3 | -- | -- | -- | -- |
| 25.81 | 0.237 | 10 | -0.15 | -- | -0.926 | -- | -- | -0.0168 | -- | 25.2 | 2 | -- | -- |
| 19.67 | 0.208 | 9.99 | -- | 0.357 | -0.799 | -- | -- | 0.0137 | 7.94 | 28.3 | 10 | -- | -- |
| 41 | 0.299 | 9.96 | 0.0587 | -- | -- | -- | -- | 0.165 | -- | -- | -- | -- | -- |
| 29.71 | 0.255 | 9.96 | -- | 0.432 | -- | -- | -- | 0.159 | 10.3 | -- | -- | -- | -- |
| 26.35 | 0.239 | 10 | -- | -- | -0.877 | -- | -- | 0.00609 | -- | 25.29 | 2 | -- | -- |
| 41.09 | 0.299 | 9.97 | -- | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 5 | 18.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 9 | 19.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 10 | 19.10 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 11 | 19.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 14 | 19.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 15 | 19.27 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 16 | 19.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 21 | 19.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 25 | 19.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 32 | 19.34 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 37 | 19.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 23 |
| 40 | 19.40 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 51 | 19.41 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 59 | 19.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 60 | 19.44 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 64 | 19.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 20 |
| 180 | 19.84 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 10 |
| 221 | 19.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 237 | 19.95 | temperature | 10 | 10 | > th | dose dependent | sin | 8 | NA |
| 251 | 19.98 | temperature | 20 | 1440 | < th | dose dependent | sin | 3 | NA |
| 281 | 20.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 582 | 20.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 691 | 20.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 20 |
| 699 | 20.36 | temperature | 25 | 1440 | < th | dose dependent | rect. | 14 | 22 |
| 734 | 20.38 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 783 | 20.39 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 828 | 20.42 | temperature | 25 | 720 | < th | dose dependent | sin | 23 | NA |
| 911 | 20.48 | radiation | 30 | 4320 | < th | dose independent | rect. | 23 | 8 |
| 993 | 20.53 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |