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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0419300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.72 (0.207) R2 : 0.16
β1 : -6.8 (0.756) R2dD : 7.09 R2D : -16.5
β2 : -- (--) R2dC : -- R2C : --
β3 : 418 (45.8) R2dE : 1950 R2E : -1960
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -1500 (164) R2dD*E : 1950 R2D*E : -1940
γ1 : -0.0955 (0.0651) R2dN8 : 0.00532 R2N8 : -9.03
σ : 0.57
deviance : 150
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_____
C
peak time of C : --
E
wheather : precipitation
threshold : 0.1003
memory length : 270
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18
open length of G : 0.994

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
149.93 0.57 4.72 -6.8 0.00392 418 -0.148 -1500 -0.0965 3.09 0.1 272 18 1
116479.05 15.9 3.66 -3.9 13.1 319 59.9 -- 5.74 5.73 0.1626 133 18.1 1.85
150 0.57 4.72 -6.8 0.0108 418 -- -1500 -0.0955 21.7 0.09952 270 18 0.994
177.06 0.624 2.85 0.028 0.0756 -0.295 -- -- -0.109 20.8 0.04549 56 19.1 2.09
150 0.57 4.72 -6.8 -- 418 -- -1500 -0.0955 -- 0.1003 270 18 0.994
176.97 0.624 2.85 0.0314 0.0705 -- 0.278 -- -0.109 19.6 -- -- -- --
177.15 0.623 2.85 0.0238 0.0728 -- -- -- -0.109 20.8 -- -- -- --
177.26 0.62 2.85 0.0327 -- -0.306 -- -- -0.11 -- 0.0001065 107 19.4 2.79
176.93 0.62 2.85 -- 0.0799 -0.365 -- -- -0.112 20.6 0.3217 86 19.5 2.35
177.45 0.622 2.85 0.0237 -- -- -- -- -0.11 -- -- -- -- --
177.16 0.623 2.85 -- 0.0727 -- -- -- -0.112 20.8 -- -- -- --
177.25 0.62 2.85 -- -- -0.297 -- -- -0.121 -- 0.3532 68 19.8 1.6
177.46 0.622 2.85 -- -- -- -- -- -0.112 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 149.93 precipitation 0.1 270 > th dose independent rect. 18 1
2 149.93 precipitation 0.1 270 > th dose dependent rect. 18 1
3 156.46 temperature 20.0 10 < th dose independent rect. 12 11
5 156.75 temperature 20.0 10 < th dose independent rect. 8 15
15 158.06 temperature 20.0 10 < th dose independent rect. 17 6
18 158.39 temperature 20.0 10 < th dose independent rect. 6 17
30 159.63 temperature 20.0 90 < th dose dependent rect. 20 1
42 160.93 temperature 20.0 90 < th dose dependent rect. 16 6
43 160.96 temperature 20.0 90 < th dose independent rect. 20 1
45 160.98 temperature 20.0 90 < th dose dependent rect. 12 10
47 161.02 temperature 20.0 10 < th dose dependent rect. 17 5
48 161.02 temperature 20.0 10 < th dose dependent rect. 6 16
58 161.19 temperature 20.0 10 < th dose dependent rect. 12 10
79 161.60 temperature 20.0 10 < th dose dependent rect. 8 14
80 161.61 temperature 20.0 10 < th dose independent rect. 4 19
93 161.77 temperature 20.0 10 < th dose independent rect. 1 22
99 161.81 temperature 20.0 90 < th dose dependent rect. 8 14
132 162.33 temperature 20.0 10 < th dose independent sin 21 NA
137 162.51 temperature 20.0 10 > th dose independent sin 21 NA
152 163.69 atmosphere 1005.0 270 < th dose independent rect. 18 1
182 165.54 wind 1.0 90 < th dose dependent rect. 20 1
185 165.58 atmosphere 1005.0 10 < th dose independent rect. 19 4
202 165.88 atmosphere 1005.0 270 < th dose independent rect. 17 3
216 165.99 temperature 20.0 10 > th dose independent rect. 8 22
240 166.73 wind 7.0 10 > th dose dependent rect. 12 1
244 166.88 temperature 25.0 30 < th dose dependent rect. 24 23
247 166.95 precipitation 0.1 90 > th dose independent rect. 13 1
250 166.95 precipitation 0.1 90 > th dose dependent rect. 13 1
260 167.11 radiation 10.0 10 < th dose dependent rect. 14 1
266 167.20 temperature 25.0 10 < th dose dependent rect. 13 1
272 167.26 radiation 10.0 10 < th dose independent rect. 14 1
284 167.41 wind 1.0 90 < th dose dependent rect. 16 5
285 167.42 wind 5.0 720 > th dose dependent rect. 21 1
292 167.58 temperature 20.0 10 < th dose independent rect. 4 23
304 167.70 radiation 10.0 90 < th dose independent rect. 12 1
323 167.81 temperature 20.0 10 < th dose independent rect. 12 23
325 167.83 wind 5.0 720 < th dose independent rect. 16 10
343 167.98 temperature 20.0 720 < th dose independent rect. 9 13
344 167.98 temperature 20.0 10 < th dose independent rect. 17 22
353 168.03 radiation 10.0 90 < th dose dependent rect. 12 1
374 168.15 wind 9.0 270 < th dose dependent rect. 15 12
375 168.17 wind 5.0 720 > th dose independent rect. 20 1
382 168.20 temperature 20.0 10 < th dose independent rect. 7 23
384 168.22 temperature 20.0 10 < th dose independent no NA NA
385 168.22 temperature 20.0 10 < th dose independent rect. 9 23
394 168.26 temperature 20.0 10 < th dose independent rect. 19 23
405 168.31 atmosphere 1010.0 270 < th dose dependent rect. 18 1
420 168.39 temperature 20.0 10 < th dose independent rect. 21 23
425 168.40 temperature 20.0 10 > th dose independent rect. 15 23
433 168.43 temperature 20.0 720 < th dose independent rect. 16 6
443 168.47 precipitation 0.1 270 < th dose independent rect. 7 11
447 168.47 precipitation 0.1 270 < th dose dependent rect. 7 11
451 168.48 wind 5.0 720 > th dose dependent rect. 20 4
453 168.49 precipitation 0.1 720 > th dose independent rect. 21 5
454 168.49 precipitation 0.1 720 > th dose dependent rect. 21 5
469 168.58 wind 5.0 720 < th dose independent rect. 21 6
486 168.65 temperature 20.0 10 > th dose independent no NA NA
538 168.83 radiation 10.0 90 < th dose dependent rect. 6 8
563 168.90 wind 5.0 720 > th dose independent rect. 20 4
565 168.91 humidity 80.0 30 < th dose independent rect. 1 1
570 168.91 humidity 80.0 30 < th dose dependent rect. 1 1
583 168.93 temperature 20.0 10 > th dose independent rect. 19 23
596 168.96 wind 3.0 270 < th dose independent rect. 8 19
605 168.99 wind 5.0 720 < th dose independent rect. 17 1
614 169.02 temperature 20.0 720 > th dose independent rect. 13 7
622 169.04 temperature 20.0 10 < th dose independent rect. 17 18
674 169.17 temperature 15.0 1440 < th dose dependent rect. 4 1
685 169.25 temperature 20.0 720 < th dose independent rect. 16 1
691 169.27 wind 7.0 10 > th dose independent rect. 12 1
702 169.30 wind 5.0 720 < th dose independent rect. 16 18
722 169.35 wind 7.0 720 < th dose dependent rect. 17 1
728 169.36 temperature 20.0 10 > th dose independent rect. 23 23
741 169.40 wind 5.0 720 > th dose independent rect. 17 10
745 169.40 wind 1.0 90 < th dose dependent rect. 14 7
746 169.41 wind 3.0 1440 < th dose independent rect. 6 1
766 169.47 atmosphere 1000.0 720 < th dose dependent rect. 10 3
768 169.47 wind 5.0 270 < th dose dependent rect. 8 19
771 169.48 wind 5.0 720 > th dose independent rect. 17 8
789 169.53 wind 5.0 1440 < th dose independent rect. 20 1
811 169.55 temperature 25.0 90 < th dose dependent rect. 12 20
824 169.61 wind 3.0 1440 > th dose independent rect. 6 1
832 169.62 radiation 10.0 270 < th dose dependent rect. 17 21
833 169.63 wind 3.0 270 > th dose independent rect. 18 1
837 169.63 temperature 20.0 270 < th dose independent rect. 9 17
840 169.64 radiation 20.0 270 < th dose dependent rect. 17 14
841 169.65 temperature 20.0 270 < th dose independent sin 19 NA
843 169.65 wind 3.0 270 > th dose dependent rect. 17 13
848 169.66 wind 3.0 270 > th dose dependent rect. 17 10
849 169.66 wind 9.0 270 < th dose dependent rect. 7 21
871 169.72 wind 1.0 90 < th dose independent rect. 20 1
885 169.74 temperature 20.0 270 < th dose independent rect. 9 20
898 169.76 temperature 20.0 30 < th dose dependent sin 22 NA
902 169.77 temperature 15.0 1440 < th dose independent rect. 4 1
909 169.78 precipitation 0.1 720 < th dose independent rect. 21 6
911 169.78 temperature 20.0 10 < th dose independent rect. 17 13
917 169.78 precipitation 0.1 720 < th dose dependent rect. 21 6
930 169.80 temperature 20.0 270 > th dose independent rect. 14 12
933 169.80 temperature 20.0 270 > th dose independent rect. 19 23
944 169.82 wind 5.0 1440 < th dose independent rect. 20 4
957 169.84 wind 3.0 270 > th dose dependent rect. 17 7
960 169.85 temperature 20.0 10 > th dose independent rect. 16 14
965 169.85 radiation 10.0 4320 < th dose dependent rect. 9 1
978 169.88 temperature 20.0 10 > th dose independent rect. 8 17
985 169.89 wind 1.0 90 < th dose independent rect. 15 6
986 169.89 humidity 80.0 90 < th dose independent rect. 20 6
997 169.92 temperature 20.0 10 > th dose independent rect. 2 23