Os09g0419200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NAD-dependent epimerase/dehydratase family protein.
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Os09g0419200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NAD-dependent epimerase/dehydratase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.39 | 0.588 | 12.2 | -0.444 | 2.9 | -3.34 | 0.591 | -3.93 | -0.000439 | 9.14 | 0.9685 | 1449 | -- | -- |
| 164.05 | 0.597 | 12.2 | -0.912 | 2.83 | -2.64 | 0.695 | -- | -0.00994 | 9.05 | 1.205 | 1464 | -- | -- |
| 157.48 | 0.584 | 12.2 | -0.42 | 2.85 | -3.39 | -- | -4.03 | -0.00238 | 9.09 | 0.967 | 1455 | -- | -- |
| 164.13 | 0.597 | 12.3 | -0.799 | 2.73 | -2.69 | -- | -- | -0.0583 | 9.05 | 1.534 | 1465 | -- | -- |
| 419.18 | 0.959 | 12.3 | -0.281 | -- | -1.73 | -- | 0.266 | 0.252 | -- | 1.643 | 1547 | -- | -- |
| 234.59 | 0.718 | 12.2 | -0.245 | 2.97 | -- | 0.487 | -- | 0.267 | 9.15 | -- | -- | -- | -- |
| 235.42 | 0.719 | 12.2 | -0.227 | 2.97 | -- | -- | -- | 0.267 | 9.16 | -- | -- | -- | -- |
| 419.2 | 0.958 | 12.3 | -0.271 | -- | -1.73 | -- | -- | 0.247 | -- | 1.977 | 1559 | -- | -- |
| 174.86 | 0.616 | 12.3 | -- | 2.85 | -2.24 | -- | -- | 0.0318 | 9.08 | 2.23 | 1464 | -- | -- |
| 744.34 | 1.27 | 12.3 | -0.236 | -- | -- | -- | -- | 0.283 | -- | -- | -- | -- | -- |
| 236.78 | 0.72 | 12.2 | -- | 2.97 | -- | -- | -- | 0.293 | 9.16 | -- | -- | -- | -- |
| 421.13 | 0.959 | 12.3 | -- | -- | -1.73 | -- | -- | 0.277 | -- | 1.977 | 1559 | -- | -- |
| 745.81 | 1.27 | 12.3 | -- | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.07 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 3 | 153.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 5 | 154.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 7 | 155.08 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 10 | 155.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 21 |
| 14 | 155.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 18 | 155.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 21 | 155.57 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 25 | 155.89 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 20 |
| 26 | 155.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 15 |
| 30 | 156.05 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 33 | 156.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 37 | 156.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 38 | 156.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 18 |
| 39 | 156.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 20 |
| 43 | 156.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 73 | 156.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 87 | 156.65 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 98 | 156.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 133 | 156.90 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 179 | 157.68 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 180 | 157.84 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 11 |
| 182 | 157.91 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 193 | 158.42 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 195 | 158.44 | radiation | 1 | 1440 | > th | dose independent | sin | 23 | NA |
| 205 | 158.68 | humidity | 60 | 720 | > th | dose dependent | rect. | 14 | 12 |
| 207 | 158.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 215 | 158.89 | radiation | 1 | 1440 | < th | dose independent | sin | 23 | NA |
| 237 | 159.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 247 | 159.41 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 279 | 160.71 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 11 |
| 283 | 160.76 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 296 | 160.87 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 18 |
| 300 | 160.95 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 301 | 160.95 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 334 | 161.34 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 352 | 161.70 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 363 | 161.73 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 365 | 161.76 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 15 |
| 381 | 161.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 389 | 161.88 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 398 | 161.94 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 10 |
| 421 | 162.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 422 | 162.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 20 |
| 426 | 162.13 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 497 | 162.22 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 508 | 162.25 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 537 | 162.48 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 551 | 162.57 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 596 | 162.82 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 632 | 163.27 | humidity | 70 | 720 | > th | dose dependent | sin | 18 | NA |
| 637 | 163.32 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 660 | 163.45 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 771 | 164.12 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 831 | 164.35 | radiation | 1 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 849 | 164.43 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 911 | 164.95 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 936 | 165.15 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 944 | 165.23 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 988 | 165.66 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 6 |