Os09g0419100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os09g0419100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.27 | 0.578 | 2.33 | -4.09 | 0.11 | 7.71 | -1.1 | 35.8 | -0.263 | 2.31 | 10 | 4320 | 18 | 12.1 |
| 590.37 | 1.14 | 3.97 | -5.1 | 0.618 | -0.408 | -0.735 | -- | -1.55 | 1.23 | 10 | 4320 | 18 | 12.1 |
| 155.89 | 0.582 | 2.33 | -4.09 | 0.117 | 7.74 | -- | 35.9 | -0.264 | 2.31 | 10 | 4318 | 18 | 12.1 |
| 173.23 | 0.613 | 3.78 | -3.77 | 0.911 | 4.47 | -- | -- | -0.727 | 1.84 | 0.2662 | 12866 | 19.2 | 13 |
| 158.07 | 0.586 | 2.31 | -4.09 | -- | 7.76 | -- | 35.8 | -0.265 | -- | 10 | 4319 | 18 | 12.1 |
| 593.64 | 1.14 | 3.96 | -5.12 | 0.142 | -- | -0.898 | -- | -1.53 | 2.86 | -- | -- | -- | -- |
| 596.39 | 1.14 | 3.95 | -5.1 | 0.139 | -- | -- | -- | -1.53 | 2.9 | -- | -- | -- | -- |
| 134.05 | 0.539 | 3.68 | -2.15 | -- | 5.09 | -- | -- | -0.319 | -- | 0.199 | 14429 | 21 | 13.6 |
| 275.91 | 0.774 | 3.62 | -- | 0.304 | 5.94 | -- | -- | -0.1 | 1.78 | 0.2899 | 12941 | 19.8 | 13 |
| 597.5 | 1.14 | 3.95 | -5.1 | -- | -- | -- | -- | -1.53 | -- | -- | -- | -- | -- |
| 1282.83 | 1.68 | 3.83 | -- | 0.0396 | -- | -- | -- | -0.961 | 1.98 | -- | -- | -- | -- |
| 210.92 | 0.676 | 3.62 | -- | -- | 6.06 | -- | -- | -0.0775 | -- | 0.2897 | 17331 | 21.6 | 13 |
| 1282.93 | 1.67 | 3.82 | -- | -- | -- | -- | -- | -0.96 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.48 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 2 | 120.52 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 3 | 120.52 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 22 | 124.71 | temperature | 15 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 23 | 125.33 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 24 | 125.36 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 32 | 126.04 | radiation | 10 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 38 | 126.12 | radiation | 10 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 43 | 126.17 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 46 | 126.23 | temperature | 15 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 66 | 126.55 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 81 | 127.30 | temperature | 15 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 125 | 128.43 | temperature | 15 | 43200 | < th | dose independent | sin | 7 | NA |
| 144 | 128.75 | radiation | 10 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 207 | 129.66 | temperature | 15 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 234 | 129.92 | temperature | 15 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 241 | 129.99 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 9 |
| 274 | 130.31 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 13 |
| 333 | 130.79 | temperature | 15 | 43200 | > th | dose independent | sin | 7 | NA |
| 354 | 130.96 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 379 | 131.10 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 387 | 131.20 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 18 |
| 415 | 131.40 | temperature | 15 | 43200 | < th | dose independent | rect. | 10 | 21 |
| 416 | 131.41 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 445 | 131.60 | temperature | 15 | 43200 | > th | dose independent | rect. | 16 | 15 |
| 484 | 131.76 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 13 |
| 485 | 131.77 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 9 |
| 507 | 131.85 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 525 | 131.94 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 536 | 132.01 | temperature | 15 | 43200 | < th | dose independent | no | NA | NA |
| 609 | 132.47 | temperature | 15 | 43200 | > th | dose independent | rect. | 10 | 21 |
| 659 | 132.79 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 660 | 132.79 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 23 |
| 665 | 132.81 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 16 |
| 694 | 132.97 | temperature | 15 | 43200 | > th | dose independent | no | NA | NA |
| 743 | 133.48 | temperature | 15 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 752 | 133.58 | temperature | 15 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 766 | 133.72 | radiation | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 771 | 133.78 | temperature | 15 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 853 | 134.73 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 856 | 134.77 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 890 | 135.33 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 915 | 135.56 | wind | 9 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 917 | 135.56 | wind | 9 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 974 | 136.40 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 986 | 136.54 | temperature | 15 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 989 | 136.68 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 1 |