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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0418500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to PnC401 homologue.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.55 (0.0714) R2 : 0.424
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.78 (0.184) R2dC : 0.136 R2C : 0.246
β3 : 2.82 (0.257) R2dE : 0.175 R2E : 0.285
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.232 (0.15) R2dN8 : 0.00389 R2N8 : 0.00282
σ : 1.34
deviance : 828.64
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_____
C
peak time of C : 1.34
E
wheather : temperature
threshold : 25.6
memory length : 900
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.43
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
808.8 1.34 4.68 -1.61 1.69 3.57 -0.718 -5.34 -0.0143 1.28 25.6 895 6.42 --
812.63 1.33 4.58 -0.739 1.72 2.97 -1.05 -- 0.134 1.1 25.57 946 6.99 --
810.75 1.33 4.69 -1.64 1.69 3.61 -- -5.75 -0.0313 1.32 25.59 894 6.41 --
816.71 1.33 4.57 -0.682 1.75 2.93 -- -- 0.153 1.3 25.6 916 6.51 --
926.2 1.42 4.77 -2.09 -- 4.57 -- -6.42 -0.457 -- 24.1 857 8.73 --
1045.94 1.52 4.57 -0.0929 2.52 -- -0.143 -- 0.174 1.58 -- -- -- --
1046.02 1.51 4.57 -0.0883 2.52 -- -- -- 0.175 1.59 -- -- -- --
942.9 1.43 4.63 -0.897 -- 4.06 -- -- -0.193 -- 23.97 841 8.51 --
828.64 1.34 4.55 -- 1.78 2.82 -- -- 0.232 1.34 25.6 900 6.43 --
1435.18 1.77 4.54 0.0132 -- -- -- -- 0.23 -- -- -- -- --
1046.22 1.51 4.57 -- 2.52 -- -- -- 0.184 1.59 -- -- -- --
963.05 1.45 4.61 -- -- 3.93 -- -- -0.0733 -- 24 831 8.37 --
1435.18 1.77 4.54 -- -- -- -- -- 0.228 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 799.64 humidity 70.0 14400 > th dose independent rect. 19 1
2 800.93 humidity 70.0 14400 > th dose independent rect. 19 12
3 802.13 humidity 70.0 14400 < th dose independent rect. 19 1
4 802.41 humidity 70.0 14400 > th dose independent rect. 19 8
5 802.43 humidity 70.0 14400 > th dose independent rect. 19 6
8 802.55 humidity 70.0 14400 > th dose independent rect. 19 4
14 805.63 temperature 25.0 720 > th dose dependent rect. 17 7
16 807.68 humidity 70.0 14400 < th dose independent rect. 19 12
19 809.28 temperature 25.0 720 > th dose dependent rect. 17 12
33 810.47 temperature 25.0 720 > th dose dependent rect. 17 15
37 813.08 temperature 25.0 14400 > th dose dependent rect. 20 1
57 817.65 temperature 25.0 14400 > th dose independent rect. 23 1
60 818.02 temperature 30.0 14400 > th dose independent rect. 18 1
84 819.18 temperature 25.0 14400 < th dose independent rect. 23 1
94 820.56 temperature 30.0 14400 < th dose independent rect. 18 1
97 820.65 temperature 30.0 14400 < th dose independent rect. 18 14
101 821.10 temperature 30.0 14400 < th dose independent rect. 18 9
105 821.25 temperature 30.0 14400 < th dose independent rect. 18 7
107 821.33 temperature 25.0 14400 > th dose independent rect. 20 5
124 822.13 temperature 25.0 14400 < th dose independent rect. 22 3
128 822.27 temperature 25.0 14400 < th dose independent rect. 20 6
206 826.19 temperature 25.0 14400 > th dose dependent sin 11 NA
207 826.22 temperature 25.0 720 > th dose dependent rect. 18 1
218 826.85 temperature 25.0 720 > th dose dependent sin 12 NA
321 831.38 temperature 25.0 14400 > th dose independent sin 11 NA
328 831.72 temperature 25.0 14400 < th dose independent sin 11 NA
426 834.54 radiation 20.0 1440 < th dose independent rect. 16 15
493 836.59 temperature 30.0 14400 < th dose independent rect. 18 20
499 836.91 radiation 20.0 1440 > th dose independent rect. 16 15
506 837.13 temperature 30.0 14400 < th dose independent rect. 10 4
541 837.93 temperature 30.0 14400 < th dose independent rect. 13 1
549 838.07 temperature 30.0 14400 > th dose independent rect. 18 20
567 838.40 temperature 30.0 14400 > th dose independent rect. 10 4
569 838.41 radiation 20.0 1440 < th dose independent rect. 16 5
592 838.69 radiation 20.0 1440 < th dose independent rect. 16 11
597 838.77 radiation 20.0 1440 < th dose independent rect. 16 3
599 838.80 temperature 30.0 14400 > th dose independent rect. 13 1
608 838.86 radiation 20.0 1440 < th dose independent rect. 16 9
615 838.97 temperature 30.0 14400 < th dose independent rect. 6 8
618 838.99 temperature 30.0 14400 < th dose independent rect. 24 14
619 839.01 temperature 30.0 14400 < th dose independent rect. 2 12
632 839.07 temperature 25.0 14400 > th dose independent rect. 4 4
670 839.43 temperature 30.0 43200 > th dose independent rect. 16 3
687 839.55 wind 5.0 43200 > th dose independent rect. 5 9
688 839.56 temperature 30.0 43200 < th dose independent rect. 16 3
755 840.11 wind 5.0 43200 < th dose independent rect. 5 9
762 840.25 humidity 90.0 43200 > th dose dependent rect. 9 2
797 840.49 temperature 25.0 14400 < th dose independent rect. 4 4
881 840.89 precipitation 0.1 43200 > th dose dependent rect. 4 17
950 841.29 temperature 30.0 14400 < th dose independent sin 5 NA
963 841.38 temperature 25.0 14400 > th dose dependent no NA NA
968 841.44 temperature 25.0 14400 > th dose dependent rect. 6 23
974 841.46 temperature 25.0 14400 > th dose dependent rect. 3 23
991 841.51 precipitation 0.1 43200 > th dose dependent rect. 4 14