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Os09g0418000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.1 (0.0331) R2 : 0.732
β1 : 1.68 (0.122) R2dD : 0.117 R2D : 0.128
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.13 (0.1) R2dE : 0.579 R2E : 0.616
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.273 (0.0711) R2dN8 : 0.0116 R2N8 : 0.0106
σ : 0.619
deviance : 176.83
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_____
C
peak time of C : --
E
wheather : temperature
threshold : -11.64
memory length : 334
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.7
open length of G : 16.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
168.2 0.609 13.2 1.12 1.92 1.96 0.749 -3.82 0.155 2.62 9.085 281 15.1 20.1
177.3 0.62 13.2 1.5 1.91 2.01 0.331 -- 0.26 2.57 9.746 292 15.1 19.9
169.26 0.606 13.2 1.2 1.89 2 -- -2.87 0.191 2.57 8.221 294 15.1 20
173.85 0.614 13.2 1.57 1.78 2.14 -- -- 0.21 2.82 6.769 313 14.8 19.9
176.44 0.619 13.1 1.65 -- 3.11 -- -0.61 0.261 -- -11.37 333 15.8 16.7
229.58 0.71 13.1 1.85 2.36 -- -0.0534 -- 0.452 2.67 -- -- -- --
229.59 0.71 13.1 1.85 2.36 -- -- -- 0.453 2.67 -- -- -- --
176.83 0.619 13.1 1.68 -- 3.13 -- -- 0.273 -- -11.64 334 15.7 16.9
235.14 0.714 13.2 -- 1.78 2.53 -- -- 0.156 2.65 7.006 311 14.8 20.1
553.88 1.1 13.1 1.95 -- -- -- -- 0.512 -- -- -- -- --
319.48 0.836 13.1 -- 2.39 -- -- -- 0.247 2.68 -- -- -- --
243.77 0.727 13.2 -- -- 3.68 -- -- 0.00541 -- -1.699 462 14.4 18
653.9 1.19 13.1 -- -- -- -- -- 0.296 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.80 temperature 10.0 270 > th dose dependent rect. 15 20
2 170.73 temperature 10.0 270 > th dose dependent rect. 16 18
9 175.58 radiation 1.0 270 < th dose independent rect. 20 20
10 175.68 radiation 1.0 270 < th dose dependent rect. 20 20
17 176.98 atmosphere 995.0 270 > th dose independent rect. 16 5
20 177.37 radiation 40.0 270 < th dose independent rect. 15 20
21 177.44 wind 9.0 270 < th dose independent rect. 21 19
22 177.60 precipitation 0.1 270 < th dose independent rect. 15 20
23 177.60 precipitation 0.1 270 < th dose dependent rect. 15 20
24 177.79 precipitation 0.1 270 < th dose independent rect. 1 10
25 177.79 precipitation 0.1 270 < th dose dependent rect. 1 10
26 177.80 atmosphere 995.0 270 > th dose independent rect. 15 20
28 177.97 wind 9.0 270 < th dose independent rect. 11 4
30 178.12 wind 1.0 270 > th dose independent rect. 16 5
33 178.22 atmosphere 1015.0 270 < th dose independent rect. 16 5
36 178.48 precipitation 0.1 270 < th dose independent rect. 16 5
37 178.48 precipitation 0.1 270 < th dose dependent rect. 16 5
39 178.57 temperature 10.0 270 > th dose independent rect. 16 5
40 178.57 radiation 40.0 270 < th dose independent rect. 16 5
41 178.57 temperature 10.0 270 > th dose independent rect. 21 19
46 178.82 wind 1.0 270 > th dose independent rect. 11 4
48 178.91 radiation 40.0 270 < th dose dependent rect. 16 4
49 178.95 wind 9.0 270 < th dose independent rect. 11 14
52 179.10 temperature 10.0 270 > th dose independent rect. 11 4
53 179.10 atmosphere 1015.0 270 < th dose independent rect. 11 4
54 179.10 temperature 10.0 270 > th dose independent rect. 15 20
55 179.12 temperature 10.0 10 > th dose dependent rect. 18 18
57 179.16 radiation 1.0 43200 < th dose dependent rect. 19 3
62 179.19 temperature 20.0 10 > th dose dependent rect. 18 18
76 179.58 wind 9.0 270 < th dose independent rect. 16 5
77 179.61 precipitation 0.1 270 < th dose independent rect. 11 4
79 179.61 precipitation 0.1 270 < th dose dependent rect. 11 4
85 179.90 temperature 10.0 270 > th dose dependent rect. 16 5
87 179.95 radiation 40.0 270 < th dose independent rect. 16 18
108 180.80 radiation 1.0 270 < th dose independent rect. 20 13
111 180.92 wind 9.0 270 < th dose independent rect. 1 10
112 180.93 atmosphere 995.0 270 > th dose independent rect. 11 4
116 180.96 wind 9.0 270 < th dose independent rect. 15 20
121 181.07 temperature 10.0 270 > th dose independent rect. 1 10
122 181.07 atmosphere 995.0 270 > th dose independent rect. 1 10
123 181.07 atmosphere 1015.0 270 < th dose independent rect. 1 10
124 181.07 temperature 10.0 270 > th dose independent rect. 11 14
129 181.21 radiation 1.0 270 < th dose dependent rect. 20 12
134 181.50 wind 9.0 270 < th dose dependent rect. 16 4
140 181.66 humidity 50.0 270 > th dose independent rect. 11 4
143 181.72 humidity 50.0 270 > th dose independent rect. 1 10
149 182.02 precipitation 0.1 270 < th dose independent rect. 16 18
150 182.02 humidity 50.0 270 > th dose independent rect. 21 19
151 182.02 precipitation 0.1 270 < th dose dependent rect. 16 18
152 182.11 radiation 30.0 14400 < th dose dependent rect. 24 5
156 182.19 wind 5.0 43200 > th dose independent rect. 15 1
157 182.19 wind 9.0 270 < th dose independent rect. 10 6
162 182.29 wind 5.0 43200 < th dose independent rect. 15 1
166 182.36 radiation 20.0 270 < th dose dependent rect. 20 11
169 182.46 atmosphere 995.0 270 > th dose independent rect. 16 18
170 182.46 precipitation 0.1 270 < th dose independent rect. 21 19
171 182.46 precipitation 0.1 270 < th dose dependent rect. 21 19
201 182.85 wind 1.0 270 > th dose independent rect. 10 6
206 182.91 wind 9.0 270 < th dose independent rect. 12 2
207 182.93 atmosphere 995.0 270 > th dose independent rect. 21 18
220 183.06 humidity 50.0 14400 > th dose independent rect. 19 3
221 183.08 temperature 10.0 270 > th dose dependent rect. 17 3
225 183.10 precipitation 0.1 270 < th dose independent rect. 14 22
228 183.10 precipitation 0.1 270 < th dose dependent rect. 14 22
232 183.16 wind 3.0 43200 > th dose dependent rect. 12 5
242 183.29 temperature 10.0 90 > th dose dependent rect. 3 9
243 183.31 wind 5.0 43200 < th dose independent rect. 12 8
248 183.34 wind 3.0 43200 > th dose dependent rect. 13 3
280 183.57 temperature 10.0 270 > th dose independent rect. 10 6
281 183.57 atmosphere 1015.0 270 < th dose independent rect. 10 6
283 183.57 temperature 10.0 270 > th dose independent rect. 16 18
290 183.68 atmosphere 1015.0 270 < th dose independent rect. 15 20
313 183.88 humidity 90.0 270 < th dose independent rect. 11 4
317 183.91 wind 1.0 270 > th dose independent rect. 12 2
328 184.09 humidity 50.0 43200 < th dose dependent rect. 17 3
332 184.12 precipitation 0.1 270 < th dose independent rect. 10 6
333 184.12 precipitation 0.1 270 < th dose dependent rect. 10 6
338 184.16 humidity 50.0 270 > th dose independent rect. 17 3
353 184.22 temperature 10.0 270 > th dose independent rect. 12 2
355 184.22 atmosphere 995.0 270 > th dose independent rect. 12 2
356 184.22 atmosphere 1015.0 270 < th dose independent rect. 12 2
357 184.22 temperature 10.0 270 > th dose independent rect. 14 22
366 184.38 radiation 20.0 14400 < th dose independent rect. 19 11
380 184.44 wind 9.0 43200 < th dose dependent rect. 11 6
405 184.58 wind 9.0 43200 < th dose dependent rect. 12 3
407 184.59 wind 1.0 270 > th dose independent rect. 21 19
412 184.64 wind 9.0 270 < th dose independent rect. 16 18
430 184.80 radiation 1.0 270 > th dose independent rect. 11 4
436 184.85 precipitation 0.1 270 < th dose independent rect. 12 2
438 184.85 precipitation 0.1 270 < th dose dependent rect. 12 2
440 184.86 wind 9.0 270 < th dose dependent rect. 15 6
445 184.89 wind 9.0 43200 < th dose dependent rect. 13 1
446 184.91 humidity 80.0 43200 > th dose independent rect. 20 3
464 185.04 humidity 50.0 43200 > th dose independent rect. 17 3
465 185.04 humidity 50.0 270 > th dose independent rect. 10 6
516 185.30 humidity 50.0 43200 < th dose independent rect. 17 2
532 185.41 radiation 1.0 90 < th dose dependent rect. 17 4
539 185.47 humidity 80.0 43200 < th dose independent rect. 20 3
546 185.51 temperature 25.0 90 > th dose independent rect. 18 18
547 185.51 humidity 50.0 90 > th dose independent rect. 17 19
562 185.58 humidity 50.0 270 > th dose independent rect. 12 2
567 185.61 humidity 50.0 43200 > th dose independent rect. 17 6
586 185.75 wind 9.0 43200 < th dose dependent rect. 11 11
590 185.77 radiation 20.0 43200 > th dose independent rect. 8 1
594 185.79 humidity 90.0 270 < th dose independent rect. 12 2
604 185.85 humidity 80.0 43200 > th dose independent rect. 21 1
612 185.90 radiation 20.0 43200 < th dose independent rect. 8 1
619 185.95 atmosphere 1015.0 90 < th dose independent rect. 17 19
621 185.96 radiation 30.0 43200 < th dose dependent rect. 8 1
663 186.11 temperature 10.0 270 > th dose independent rect. 20 10
664 186.11 temperature 30.0 270 < th dose independent rect. 20 10
665 186.11 humidity 50.0 270 > th dose independent rect. 20 10
668 186.11 atmosphere 995.0 270 > th dose independent rect. 20 10
669 186.11 radiation 20.0 270 < th dose independent rect. 20 10
673 186.11 temperature 10.0 270 > th dose independent rect. 6 14
674 186.11 atmosphere 1015.0 270 < th dose independent rect. 6 14
682 186.14 wind 1.0 43200 < th dose dependent rect. 11 17
686 186.16 radiation 40.0 90 < th dose independent rect. 18 17
689 186.19 precipitation 0.1 270 < th dose independent rect. 11 14
692 186.19 precipitation 0.1 270 < th dose dependent rect. 11 14
707 186.28 wind 9.0 270 < th dose independent rect. 20 10
708 186.28 radiation 40.0 270 < th dose dependent rect. 16 18
715 186.33 atmosphere 995.0 270 > th dose independent rect. 6 14
760 186.55 radiation 40.0 43200 < th dose independent rect. 9 1
769 186.59 radiation 40.0 43200 > th dose independent rect. 10 2
778 186.62 precipitation 0.1 270 < th dose independent rect. 6 14
781 186.62 precipitation 0.1 270 < th dose dependent rect. 6 14
840 186.80 radiation 20.0 43200 > th dose dependent rect. 9 1
855 186.84 temperature 25.0 4320 > th dose independent rect. 17 1
883 186.92 radiation 1.0 14400 < th dose dependent rect. 2 3
893 186.95 atmosphere 995.0 10 > th dose independent rect. 17 19
904 187.00 radiation 20.0 43200 < th dose independent rect. 19 16
906 187.01 wind 5.0 43200 < th dose independent sin 20 NA
907 187.01 temperature 25.0 4320 < th dose independent rect. 16 3
908 187.01 radiation 20.0 43200 < th dose independent rect. 6 5
915 187.02 temperature 25.0 4320 < th dose independent rect. 17 1
920 187.02 radiation 20.0 43200 < th dose independent rect. 22 13
934 187.06 temperature 10.0 10 > th dose dependent rect. 4 9
985 187.16 radiation 20.0 43200 < th dose independent sin 8 NA
989 187.16 radiation 10.0 43200 > th dose dependent rect. 6 4